Gambusia affinis (western mosquitofish): 122829175
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Entry
122829175 CDS
T07758
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122829175 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122829175 (taf5l)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122829175 (taf5l)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122829175 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
122829175 (taf5l)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122829175 (taf5l)
STAGA complex
122829175 (taf5l)
TFTC complex
122829175 (taf5l)
SAGA complex
122829175 (taf5l)
SLIK complex
122829175 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Vps41
PROPPIN
Nbas_N
PEP5_VPS11_N
Beta-prop_WDR75_2nd
WD_LRWD1
WDR54
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
122829175
NCBI-ProteinID:
XP_043969460
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All DBs
Position
LG04:complement(6113499..6118242)
Genome browser
AA seq
593 aa
AA seq
DB search
MKRVRAEQIQYAVAQYLKRRQYVDTDSSLKGAKLFQSTEELAAGLTVQTESGCANIVSAA
PCQPDPQQYEVQFSRLRCFLSETEISYAQEVSCLLYPLYVYLHLDMVHCGLKGAVDSFYV
RFHDAFLHDGEQRSVVEQLRHVVTAQDVAANPKLRSFLEHKYVVHLTEPAHSYLLRYLQS
DDNSAICRALSTHLQVEVTASRRTEYQLYGAATGSMSGVGGAECAAEALEVPAGIPQNEV
ALLALQDCIKKVREGPPSLTTICFYAFHHTEQMLNAAEVSPDSRLLAAGFDSSAVKLWSL
RARKLKAKPHQADVSYIHLACDVQEEEVDEEDGCGSEVKMLRGHSGPVYRTAFLTDSSGL
LSCSEDSTIRYWDLGSFTNTVLYQGHGYPVWDLDVSPCSLYFASGSHDRTARLWTFSRSY
PLRLYVGHLSDVDCVKFHPNSNYLATGSTDKTVRLWSTQQGQSVRLFTGHRGAVLALAFS
PNGKYLASAGEDQRVKLWDLAAGTLFKELRGHADSITSLSFSPDSSLVASSSIDNSVRVW
DIRSSHSGAPAADGSSSELVGQYVGNTSNVLNVQFMACNLLLVTGTALEKTEP
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgggtccgggccgagcagatccagtacgctgtggctcagtacctgaagaggaga
cagtatgtggatactgacagctccctgaaaggagccaaactcttccagtccacagaagag
ctggctgctggtctgactgtgcagacggagtcaggctgtgccaacatcgtctctgctgct
ccctgccagcccgacccgcagcagtatgaggtccagttctccaggctccgctgctttctc
tcagaaacagaaatctcttatgcccaggaggtcagctgcctcctctacccgctctatgtt
tatctccaccttgacatggtgcactgcggcctgaagggggcagtggacagcttctacgtc
cgttttcacgacgcctttcttcacgacggggagcagcggtcggtggtggagcagctccgc
cacgtcgtcacggcgcaggacgtcgccgccaatcccaagctgaggtctttcctggagcat
aagtatgtggttcacctgacggagccggctcacagctacctgctgcgctacctgcagagc
gacgacaacagcgccatctgtagggcactcagcacacacctgcaggtggaggtcaccgct
tccaggcgaaccgagtaccagctgtacggagccgccactggctccatgtcgggcgtgggc
ggagccgagtgcgccgccgaggcgttggaggttcctgccgggatcccgcagaacgaggtg
gcgcttctggcgctgcaggactgcatcaagaaagtccgcgaaggcccgccgtcgctcacc
accatctgcttctacgccttccaccacacggagcagatgctgaatgcggcggaggtttcg
cccgacagccggctgttggcggccgggttcgacagctccgctgtgaagctgtggagcctc
cgggccaggaagctgaaggccaaaccgcaccaggccgacgtgtcgtacatccacctggcg
tgcgacgtgcaagaggaggaggtggacgaggaggacggctgcggcagcgaggtgaagatg
ctgcgcggccacagcggtcccgtctatcgcaccgcgttcctgaccgacagctccggcctg
ctgtcctgctctgaggactcgaccatccgctactgggacctgggcagcttcaccaacacg
gtgctgtaccagggccacggctacccggtgtgggacctggacgtcagcccttgcagcctt
tactttgccagcggctcccacgaccgcaccgcccgcctctggaccttctcgcgctcctac
ccgctgcggctctacgtcggccacctgtccgacgtcgactgcgtcaagttccaccccaac
tccaactacctggccaccggctccacggacaaaacggtgcggctgtggagcacccagcag
ggccagtcggtgcggctcttcacgggccaccgcggagccgtactggcgctcgccttctcg
ccgaatgggaagtacctggcgtcagccggcgaggaccagcgggtgaagctgtgggacctg
gcggcggggacgctgttcaaagagctgcgcggccacgcggacagcatcaccagcctgtcc
ttcagcccggacagcagcctggtggcgtcctcctccatagacaactccgtccgcgtctgg
gacatccgcagctcacacagcggggcgccggccgccgacggctcgtccagcgagctggtg
ggtcagtacgtgggaaacaccagcaacgtcctgaacgtccagttcatggcctgcaacctg
ctgctggtcacaggaacggcgctggagaaaaccgaaccgtag
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integrated database retrieval system
