Gambusia affinis (western mosquitofish): 122829218
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Entry
122829218 CDS
T07758
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122829218 (htt)
04131 Membrane trafficking [BR:
gaf04131
]
122829218 (htt)
03029 Mitochondrial biogenesis [BR:
gaf03029
]
122829218 (htt)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122829218 (htt)
Membrane trafficking [BR:
gaf04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
122829218 (htt)
Mitochondrial biogenesis [BR:
gaf03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122829218 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
HEAT_ECM29
GNC1_N
Motif
Other DBs
NCBI-GeneID:
122829218
NCBI-ProteinID:
XP_043969536
LinkDB
All DBs
Position
LG04:complement(19268364..19307726)
Genome browser
AA seq
3181 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRITKRQEETVQETLAAAIPKI
MSALGNFANDGEIKVLLKSFVANLKSGSSTIRRTAASCAVSVCQHSRRTSYFYTWLLNVL
LGLLLPVDDEHPSHLILGVLLTFRYLMPLLQHQVNTSSLKGSFGVMRKEADVQPTPEQLL
QVYELTLHYTQHWDHNVVTAALELLQQMFRTPPPELLHVLITAGSIPHATVFRQDTESRA
RSGSILELIAGGGSSCSPLLLRKQRGKILSGEEDGLEDDPERAEVNAGAFTDGSSAAQVD
IITEQPRSSQHTLQPGDSVDLSASSEQGGGGGTSASGTPESPNDNEEEMLSRSSSGANVT
PETADYTTPENATPEGGGPLGEGGMALGTNDRSLPPSDSSQTTTEGPDSAVTPSDVAELV
LDGSESQYSGMQIGTLQDEEDEGAASSSQEEPPFLQSALALSKPHLFDGRGHNRQGSDSS
VDRFIPKDEPAEPEPDNKPSRIKGPIGHYTDQGAEPLVHCVRLLAASFLLTGHKNGLIPD
KDVRVSVKALAVSCVGAAAALHPEAFFNSLYLEPLDGVPVAEQQYISDVLGLIEHGDPQI
RGAIAILCGAIVQAALTKTRYNIHTWLAGVQSTTGNPLSLVDLVPLLQKTLKDESSVTCK
MACAAVRHCIMTLCSSTLSELGLQLVIDLFALRDSSYWLVRTELLETLSELDFRLINFLE
RKTETLHKGDHHFTGRLRIQGRVLNDVVIYLLGDDDPRVRHVAASAVSRLVPRLFFDCDQ
GQVDPVVAIARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNFSNSVSDVSLENNLSR
VVTAVSHAFTSSTSRALTFGCCEALCLLASNFPVGTWSTGWHCGYVSSSSNFSSRSSLNR
SRGRTLSLSQSSNAPASSASSSSALDSERKTLTVGPANMVLSLLSSAWFPLDLAAHQDAL
LLCGNLLAAVAPKCLRNPWAGEEEGSTGNTGAGPNKTEEPWTALSERSLVAMVEQLFSHL
LKVLNICAHVLDDTPPGPAAKAALPSLSNTPSLSPIRRKGKEKETTEATAVPMSPKKSNE
INTAGRQADSTTSAAVNKSITLGSFYHLPPYLKLYDVLKATHANYKVTLDLYSSQEKFGG
FLHAALDVLSQLLELATLHDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNLA
SQYDSVLSGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQ
DTSGWFDVMQKASNQLRSNIANATRHRGDKNTIHNHIRLFEPLVIKALKQYTTSTSVALQ
RQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLVLLS
YERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVYDLFVLRGSNKADAGKELD
TQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMIAKQQMLL
DSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTIPITMASVATVQLWVSGILAVLRVLVS
QSTEDIVLSRVHELSLSPHLLSCHTIRRLHHQNPSPSDPSASCDQEASDDAQRVPPEETF
ARFLLQLVGVLLDDISSRRVKVDITEQQHTFYCQQLGTLLMCFIHIFKSGMFRRITAAAS
RLLKGEGGGQPGPEAGLYYPLEGLNSMVQSLVTTHPPLVLLWCQVLLIINYTNYSWWAEV
HQTPRGHSLSCTKLLSPHSSGEGQEEEKPESRLAMVNREIVRRGALILFCDYVCQNLHDS
EHLTWLIVNHVRDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLPTPTMLKKT
LQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQNSIAQLPV
EELERIQEYLQTSGLAQRHQRFYSLLDRFRATVADTSSPAPPVTPHPLDGEPPIDPEKVV
ADKEWYVALVKSQCCLHGDVSLLEATELLTKLPAADLLSVMSCKDFNLSLLCPCLGLGVQ
RLTRGQGSLLLETALQVTLNQLEEVTGSLPAPHQSFLPPPHPQPYWTQLGDVYDELGFYP
RVLALCRALSQYLLSVNQLPSSLHIPSDKEHLITSFTCMAAEVVVWRLLQDQLPLSVDLQ
WALSCLCLALQQPCVWNKLSTLEYKTYTCSLIYCLHLIIASVAVHPGDRLLHPEKKKSRG
EKGGEDQLDSALLNNQCEWQACEIMAELVEGLQSILSLGHPRNRAFPVFLTPTLRNIVIS
ISRLPLVNSYTRVPPLVWKLGWSPQPGGEFGTTLPEIPVDFLQEKDVFREFLYRINTLGW
SNRTQFEETWATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAVQAITSLVLSAMTLP
TAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVSTHHPYHAW
DPVPSLSAASAGTLISHDKLLLQINTERELGNMDYKLGQVSIHSVWLGNNITPLREEEWG
EDEEDEADTPVPTSPPVSPINSRKHRAGVDIHSCSQFLLELYSQWLIPGSPSNRRTPTIL
ISEVVRSLLAVSDLFTERNQFDTMFSTLLELQKLHPPEDEILNQYLVPAICKAAAVLGMD
KAIAEPVCRLLETTLRSTHLPSRLGALHGVLYVLECDLLDDTAKQLIPTVSEYLLSNLKA
IAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGVIQLCGVMVSASEDSTPSIIYH
CVLRGLERLLLSEQLSRVDAEALVKLSVDRVNMPSPHRAMAALGLMLTCMYTAVLASCSD
ATGVRGQVDSVAEAVGVTAGHVGFSSGKEKASPASRPAHSDPQAPDSESVIVAMERVSVL
FDRIRKGFPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQ
TLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWISALLPHVISRMG
SSETVDVSLFCLVAMDFYRHQIDEELDRRAFQSVFETVASPGSPYHQLLDCLQSIHQEAS
L
NT seq
9546 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctaatgaaggcctttgagtctttgaagtcatttcaacaacag
cagggaccaccgacagcagaggagctcgttcagagacaaaaaaaggagcaagctacaaca
aaaaaggacagagtgacccattgcctgacgatatgtgaaaatattgtggctcaatcactg
agaacatctccagagtttcagaaactgctcgggatcgccatggagatgtttcttctgtgc
agcgatgacagtgaatcagatgtccgtatggtggctgatgagtgcctgaacaaaatcatc
aaagctctgatggattcgaacttgcctagactgcagctggagttgtacaaagaaattaaa
aagaacggtgcctcacggagtctgagggcagctttgtggaggtttgctgagctcgcccac
ctcatccgaccccagaaatgcagaccttacctggtcaacctgctgccatgcctcagtcgg
atcaccaagcgtcaggaggaaaccgtgcaggagacgctggctgcagcaatacccaaaatc
atgtcagcgttgggaaacttcgccaacgatggcgagattaaggtgctgctgaagtcgttt
gttgccaacctgaagtccggctcttccaccatcagacggacagcggccagctgcgccgtc
agcgtgtgccaacactccagacgcacaagttatttctacacatggctccttaatgtgctg
ctgggcctgttgcttccggtcgatgatgaacaccctagccatcttattttgggggtgctg
ctaacttttcgctacctgatgcccctgctgcagcaccaagtcaacaccagcagcctcaaa
gggagctttggagtgatgaggaaggaggccgatgtccagccaacacctgagcaactccta
caggtgtacgagctgacgctgcactacacgcagcattgggatcacaacgtggtcacagcc
gccctggagctcctgcagcagatgttcaggactcccccgccggagcttctgcacgtgctc
atcacggccggcagcattcctcacgccaccgtgtttcgtcaggacacggagagccgcgca
cgctcgggcagcatcctggagctcatcgcggggggagggtcttcctgcagtccacttctt
ctcaggaaacagagaggtaaaattctttctggagaagaggatgggttggaggacgaccct
gagagagcagaagtcaacgcgggagccttcacagacggctcgtctgctgctcaggtcgac
atcatcacagagcagccgcgctcttcgcagcacacgctgcagcccggtgactctgtggac
ctcagcgcctcctctgaacagggcggcggagggggcacgtccgcatcaggcactcccgag
tcacccaatgacaacgaggaggaaatgctgagtcgaagttccagcggcgccaacgtcacc
ccggagacagccgactacacaacaccagaaaacgccacccctgaaggtggggggccactc
ggcgaaggcgggatggcgctgggcactaatgatcgatcgctcccaccaagcgactcctct
cagacgaccacagagggaccggattcggccgtgactccttcggacgtagcagaactggtc
ctggacggcagcgagagccagtactccggcatgcagataggaacactgcaggatgaagaa
gatgaaggagcagcatcttcctcccaagaggaacccccgttcttgcagtcggccctcgct
ctgagtaagcctcatctgtttgacggccgaggtcacaatcggcagggttcagacagcagc
gtggaccgcttcattcccaaggatgagcctgctgaacccgaacctgataataaaccgtcg
cggataaagggtccaattggacactacacagaccagggggcggagccactggttcactgt
gtgcgacttcttgctgcttcctttcttctcacaggacacaaaaatggattgattcctgat
aaagacgttcgagtgagtgtgaaggcgttggcggtcagctgcgtcggagctgcagcagcg
ctgcatcctgaagcattttttaattctctctacctggagccactggatggcgtcccagtt
gcagagcagcaatacattagtgacgttctgggcctcattgaacacggagacccacagatc
agaggggccatagccatcctctgtggagccatcgtccaagctgcgcttaccaaaacacgt
tacaatattcacacctggctggccggtgtgcagagtacaacaggtaaccctctgtccctg
gtggatttggtgcctttgctccagaaaactttaaaagacgaatcctcggtcacctgcaag
atggcgtgtgctgcagtcaggcactgcatcatgacgctgtgcagcagtacgctgagtgag
ctcgggttgcagctggtgatagacctctttgctctgcgggattcttcctactggctcgtt
cgcactgagctcctggaaactctgtccgaattagacttcagattaattaatttcttggag
agaaaaactgaaactttgcacaaaggagatcatcacttcactgggcgattacggattcag
ggcagggtcttgaatgacgtggtcatctatctgttgggagacgacgatccaagagtgcga
cacgtggcggcctcggctgttagcagactcgttccaagattgttctttgactgtgaccaa
ggccaggtagacccagtggtggcgatcgcccgggaccagagttcagtctacctgcagcta
cttatgcatgagacacaacccccgtcgcagttcacagtcagcacaatcacaaggacgtat
cgaggttacaacttttctaactctgtgtccgatgtctcattggaaaataacctgtccaga
gttgttactgcagtctcccacgctttcacatcttccacctccagagcgctaacttttggc
tgctgtgaggccttgtgtcttctagcatcaaattttcctgttggtacctggagtacaggc
tggcactgtggctacgttagctctagcagcaacttttcttcacgttctagtctcaaccgc
agcagaggcaggacactcagtttgtctcagagcagcaacgctccagcctcttcggcctcc
tcctcgtctgcgctggattctgagcgtaagacgctgaccgtgggaccggccaacatggtg
ctctccttgctgtcttctgcgtggtttcctctggatcttgctgcacaccaagatgcactt
ttgctctgtgggaacctgcttgcagctgtggctcctaaatgcttacgcaacccctgggct
ggagaggaggaaggaagcactgggaacactggtgcaggcccaaataaaacagaggaaccc
tggacagccctgtcagagcgctccctggtggccatggtggaacagctgttttctcatttg
ctaaaggttctcaacatctgtgcacatgttctggacgacacaccgccaggaccagcagct
aaggctgctctcccctctctgagcaacacgccgtccctcagtcccatccgcaggaaaggg
aaggagaaggagacgaccgaggccaccgctgttcccatgagcccaaagaagagcaatgag
atcaacacagcaggcaggcaggcagacagcaccacttcagcagctgtgaacaaatccatc
accctgggcagcttctaccacctgcctccctacctcaagctctacgatgtcctcaaagct
acacacgccaactataaggtgacgttggatctctacagtagccaggagaagtttggaggt
tttctgcacgctgccttggatgttttgtcccagctgctggagctggccactctgcatgac
atcggaaagtgcgtagaggaaattctgggctacttgaagtcctgtttctccagagaaccg
accatggccactgtttgtgtgcagcagctgttgaagacgctgtttgggaccaacctggct
tcccagtatgatagtgtgctgagtggacccagccgctcccagggcaaagctctgcgcctc
ggctcgtccagcctgcgcccgggcctctaccactactgcttcatggctccctacacacac
ttcacccaggctctggctgatgccagcctccgtaacatggtgcaggctgagcaggagcaa
gatacctcgggatggtttgatgttatgcagaaagcatccaatcagctgagatccaacatc
gccaatgctacacgtcacagaggagacaagaatactattcacaaccacatccgtctgttt
gagccgcttgtgatcaaagctttgaagcagtacaccaccagtacctctgtggctctgcag
agacaagttctggacctgctggcccagcttgtgcagctcagagtcaattactgcctgctg
gactcagatcaggttttcataggctttgtcctgaagcagtttgaatatattgaagtgggc
cagttcagggattctgaagccatcatcccaaacatctttttcttcctggtgctgctgtct
tatgaacgttaccactccaagcagattatcagcatccccaagatcatccagctgtgcgac
ggcatcatggcgagcggcaggaaagcggtcacccacgccattcccgccttgcagcctata
gtttatgatctttttgtgctgagaggctcaaacaaagcagatgcaggcaaagagctggac
actcagaaggaagtggtggtgtccatgcttctcagacttgtgcagtaccatcaggtgttg
gagatgttcattctcgttctgcagcagtgtcacaaagagaacgaggacaaatggaagcga
ctgtccaggcagattgcagatgttattcttcctatgattgcgaagcagcagatgctgctg
gactctccagaggcgttaggagtgttgaacaccttgtttgagacggtggccccctcgtct
ctcagaccagttgacatgctgctgaagagcatgttcaccatccccatcaccatggcatct
gtcgctacagtacagctgtgggtgtctggaatcctggcagtgctcagagtactcgtgtcc
cagtccaccgaggacatcgtcttgtctcgggtccacgagctgtctctctccccacacctc
ctgtcctgccacacgattcgccgtctgcatcatcagaacccgtcccccagcgacccgtcc
gccagctgtgaccaggaagccagcgacgatgcacagagggttccacctgaagaaaccttt
gccaggttcctgctacagctggtcggagtgttacttgacgatatttctagcagacgggtc
aaagtggacattacggagcagcagcacaccttctactgccagcagctgggaacgttgctc
atgtgtttcattcatatttttaaaagcggaatgtttcgcaggatcacggcagcagccagt
cggctcctgaagggcgagggcggcggacagccgggtccggaggccggtctctactaccct
ttagaggggctgaacagcatggtgcagagcctcgtcaccacccacccgcctttggtgctg
ctgtggtgccaggtgcttctcatcattaactacactaactattcgtggtgggccgaggtt
catcagactcccagaggtcacagcctctcatgcacgaagctgctaagtcctcactcctct
ggtgaaggacaagaggaagaaaaaccagagtcccggttagcaatggtcaacagggagatt
gtacgcaggggagctctgattctcttctgtgactacgtgtgtcagaatctccatgactcg
gagcatttgacctggctgatcgtcaaccatgtgcgtgacctcatcagcctttcccatgag
cctccagtacaagatttcatcagcgctgtccaccgcaactctgccgccagcggcctcttc
attcaggcgatccagtctcgatgcgacaatctccccactcccaccatgttaaagaagact
ttacagtgtttggaaggcatccacttgagtcagtctggctctctgctcatgctttatgtg
gacaagctgctcaacacgccgttcagggttttggctcgcatggtggacacgctggcgtgc
cgaagagtggaaatgttgctggctgagacgctgcagaacagcatagcccagctgcctgtg
gaggaactggagagaattcaggaatacctccagaccagcggactagctcaaaggcatcag
aggttctactccctgctggacaggttcagagctactgttgccgacaccagcagcccagca
cctccagtcacgccccaccctctggatggggagccacccatagaccctgaaaaggttgtt
gctgacaaggagtggtatgttgctctggtgaagtcgcagtgctgtctccatggagatgtt
tctctgctcgaagcaacagagctcctcactaaattacctgctgctgatctactctcagtc
atgagctgcaaggatttcaatctcagcctgttgtgcccctgcctgggtttgggggtgcag
aggttaaccaggggtcagggatctctgttgttggaaacggccctgcaggtgaccctcaat
cagctagaagaggttacggggtcacttcctgccccacaccagtccttcctgccgccacct
cacccccagccatactggacccagctgggtgacgtttacgatgagctgggtttctacccc
agggttctggccctctgcagagctttgtcccagtatctgttgagtgtgaatcagctgcct
tcatcactacatattccctctgacaaggagcacctcatcacttctttcacctgcatggcg
gccgaggtggttgtgtggcggctgcttcaggaccagctgcccctcagcgtggacctgcag
tgggctctgtcctgcctgtgcctggccctgcagcagccctgtgtgtggaacaagctctct
accttggagtacaagacgtacacctgctccctcatctactgtctgcaccttatcattgct
tctgtggctgttcatcctggtgaccggctgctgcatccagagaagaaaaagtctcgagga
gaaaaaggcggtgaagatcagctggactcggctcttctcaacaatcaatgcgagtggcaa
gcatgcgagatcatggcagaactggtcgaaggactgcagagcatcctctccctgggtcac
ccgaggaaccgtgcgtttccagttttcctcacgccgacgttgcgaaacatcgtcatcagt
atttcacgcctgcctctggtcaacagctacaccagagtacctccactggtttggaaactg
ggctggtcccctcaaccaggtggagaatttggcacaacgctgcctgagatccctgttgac
ttcctgcaggaaaaggacgtcttcagggaattcctttaccgcatcaacacattgggctgg
agcaataggactcagtttgaggaaacctgggccactctgctgggggtgctggtcactcaa
ccaatcacaatggaccaggaggaagagactcaacaagaggaggacctggagcgtacccag
ttaaacgtgttagcagtgcaggctatcaccagcctggtgctgagtgccatgaccctgccc
actgctggcaaccccgcagttagctgtctggaacagcagccccgaaacaaaagtcttaaa
gctctggaaacacggtttggaaggaaactcgctgtgattcggggtgaagtggagcgagaa
attcaggctctagtgtcaaagagggacaacgtcagtacacaccacccgtaccacgcctgg
gaccctgtgccctcactttcagctgcttctgcaggtacgctgatcagccatgacaagctg
ctccttcagatcaacacagagagggagttgggcaacatggattacaaactggggcaggtc
tccatccattcagtctggttaggtaataacatcactcctcttagggaggaagaatggggc
gaggatgaagaagacgaagcagacactcctgtgccaacctccccacctgtatcgcctata
aattcaaggaagcaccgtgcaggtgtagacattcattcatgttcccagtttcttctggag
ctctacagccagtggttgatcccaggctcccccagcaacaggaggacgcccaccatcctc
atcagtgaagtggtccgatcgctgctggcggtgtcggacttgttcacggagaggaaccag
tttgacacgatgttctccaccctgctggagctccagaagcttcacccgcccgaagacgag
atcctgaatcagtacctggtgcccgccatctgtaaggccgctgccgtgctgggcatggac
aaagcaatagccgagccggtgtgtcgcctgctggagacgacgctgcgcagcacccacctg
cccagccgcctgggggctctacacggggtgctctatgtgttggagtgtgacctgctggat
gacacggctaaacagctcatccccacagtctctgagtaccttctgtcaaacctcaaggcc
attgctcactgtgtgaacctgcataaccagcagcatgtgttggtgatgtgtgcagtggcc
ttctacatgatggagaactaccctctggatgttggagctgagtttatggctggagttata
caactctgtggtgtgatggtgtcagccagcgaggactccactccctccatcatctatcac
tgcgttctgcgcggactggagcgcctcctgctgtcggagcagctgtcccgcgtcgatgca
gaagctttggtcaagctcagcgtggatcgagtcaacatgccgtcacctcaccgagccatg
gccgccctgggcctcatgctcacctgcatgtacaccgcggtgctcgcgtcctgttcagat
gcgacaggggttagaggtcaggttgactctgttgcggaggcggttggcgtcacggcgggt
catgttggtttctcctcaggcaaggagaaagccagccctgccagccgccccgcccactct
gacccgcaggccccggacagcgagtcggtcattgtcgccatggagagggtctccgtgctc
ttcgacaggatcaggaagggtttccccagcgaggctcgggtcgtgtcgaggattctgccc
cagtttctggacgacttcttccctccacaggacgtcatgaacaaagtcatcggagagttc
ctgtccaatcagcagccgtacccacaattcatggccactgttgtctacaaggttttccag
acgctgcacgccacgggccagtcttccatggtacgcgactgggtgctgctgtctttgtcc
aacttcactcagaggacaccagtagccatggccatgtggagcctgtcctgcttctttgtc
tctgcttccacctcccagtggatctctgcccttcttccacatgtgatcagccggatgggg
tccagtgagacggtggacgtcagtctgttctgcctggtcgccatggatttctatcggcac
cagatcgacgaggagctggaccgcagggcctttcagtcggtgtttgagacggtggcgtcg
cctgggagcccctaccaccagctgctggactgtctgcagtccatccaccaggaagcatcg
ctctga
DBGET
integrated database retrieval system
