Gambusia affinis (western mosquitofish): 122829339
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Entry
122829339 CDS
T07758
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122829339 (helz)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
122829339 (helz)
3'-5' decay
Other 3'-5' decay factors
122829339 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_30
AAA_19
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
Mov-10_helical
AAA_16
PhoH
AAA_5
zf-CCCH_4
AAA_7
Motif
Other DBs
NCBI-GeneID:
122829339
NCBI-ProteinID:
XP_043969739
LinkDB
All DBs
Position
LG04:24929388..24988923
Genome browser
AA seq
2013 aa
AA seq
DB search
MADRRAEKSCEEASKSLARREYEAAVTHSTDALVVLAPQASSPGAPVLPCPPSAVAAGPL
RSRALLYRIAAFLQLKNYDGADEDCKHVLADEVARGDGSLQASLHSMLLDGSLQEVVSIL
SKALYGEPVNGIVTKDLTRLKMLFSEIEATKREMAPEYTDDQDEEVQDGWQFRPPPRGVT
SSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYM
ETLIEKWMNSLSPEKVLSDSLEGVTVETSSGLSVTVTSKKSSNSWIFSLLCKPARKLFRI
ALLYDAHRPHFFITGVSAGDRLQSVPKGCQEWTPGDDSAAAANNGLDHCVYKVAVGFSTE
IFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLITAKRWDSSCKTIVEF
TPNETVADLERSLLARYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEV
SKFNIKANLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
LLPLGREGFGGHAPSGVKERVYEAVIEEKTKDYIFLRICKSCCEELMLQPDREIQVELQF
QLNRQPLCEMHYALDRIKDNTILFPDIGLVPTIPWSPNRQWDEQLDPRLNAKQKEAVLAI
TTPISVSLPPILIIGPYGTGKTFTLAQAVKHILRQDNSRVLICTHSNSAADLYIKDYLHP
YVEAGNDHARPLRVYFRNRWVKTVHPVVQQYCLISSTQVTFQMPTREDILRHRVVVVTLS
TSQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFPLASKTTRIVLAGDHMQLSPFVYSE
FARERNLHVSLLDRLYEHYPPEFPCRILLCENYRSHEAIINYTSELFYDGKLIASGKQPC
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVSWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHE
NSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHQSSSQGLHPHHHPHP
QHGVAASNKQAAQHHQQQQQQQQSPPKGKQANHTEHLPPDGYVQSSPAVLMGNPIRAFTP
PLGANPAGIGKSPSPVQRIDPHTGASILYVPAMYGGNVVMPMPLSLPWPGYQNRFAVDPR
IMSHPAAMAYNLNLLQPQNRGSPIPYSGVAHPSPLGLAQLSPEKELQADLIRNGKVDGCT
KAEQTRLQTPERKNADIREKQGDLDTGQSRSLDSQPEGLVGFPNALLHRKDPSATQRSLN
YHLAPPSPAFPPHPASGRAFPQQYPVPRLPYRVGQPPHPGMPQQNQQQQLSPAFTGGSHA
SFFSGSMAAHRSVQSPTMDGAESSGAEEMSGTIRTHMGHQGAQHPGLPQHNRVSNFGEDG
QDGSLVDGLDLQSPMTLEALSQQQQQQQQQQQAARLGQWGEAAGPFLQGSVAFPLPQQLA
HLAQSGMARFPPQLLRAATWGLGANMDDEAVSSATAGPTCSRYPGLLREMPPQEQPEPRE
ATELQPPPQSRLLQYRQSQTRASGEPSSSLAPLSNHAGPFPAGLYSHESGRNLLNENLLN
NPALQQQQHPGNPLYNAGSYPNQPPAQSGGSSPPPSNVKYLLQEAQWSHGGAASVSQQNH
LLGNQSHSLLYGLPLMAHPSRPEQVLMQLHQQQHQQQQQQNQGLDSESYHPLSPRTSAAA
ALHSVDEYEPRGPGRPLYQRRISSSYPDESSPAHPCHPEPQDHPQQPHGSYSYPPHDHLW
PSNGGGPGPFQNIPCNGASKLVQHRELLASKVHRQTDEQAKAEPAGAPQQQAHPHNLNSL
QHQFPPLMPNKKQQQQQPPPPPPPPQPPTEPAQGAPSLVKPPTMSYASALRAPPKPRAVR
PEQVKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcaaatcgttagccaggcgg
gagtacgaggcggcggtcacccacagcacggacgccctggtggtcctcgcgccccaagcc
tcgtcgcccggcgcccccgtactgccctgccctccctcggcggtcgccgccggacccctc
cgcagccgcgccctgctctaccgaattgctgccttcctacagctgaaaaactacgacgga
gcagatgaagactgcaaacatgttctggcagacgaggttgctcggggtgacggctctctg
caggctagtttgcactccatgcttttggatggcagcctgcaagaggtggtcagcatccta
tctaaagccctgtatggagaaccagtgaatggcatcgttacaaaagacctgaccagatta
aaaatgctcttctccgaaattgaggcaacaaaaagagagatggcccctgaatacacagat
gaccaggatgaagaagtccaagatggctggcagttccggcctcctcccagaggggtcact
agcagcgaggagtacacactctgcaaaaggtacttggagcaaggcctgtgtcggtacggg
gcgcagtgtacgtcggcccactcgcaagaggagcttatggagtggcagaaacgttacgcc
tcccgactcattcgcctcaaacagcagcaggaaagcaaacacttcactgagaactacatg
gaaactctaatcgaaaagtggatgaactccctttccccggagaaagtgttaagtgacagt
ctagaaggcgtgacagttgagaccagctccggcctttctgttacagtcacctcgaaaaaa
tcctccaactcctggatcttttccttgttgtgcaagccggccagaaagctgttccgcatt
gccttgctctacgacgcccatcgaccacacttcttcatcaccggcgtttcagccggggat
cgcctgcagtcggttcccaaaggatgccaggagtggacgcccggagacgactcggcggca
gcggccaacaacggcctcgaccactgcgtctacaaagtggcggtgggcttcagcaccgag
atctttggcaccttcagacagaccatcgtgttcgactttggctccgagccggtgctgatg
cagaggatcatggtggacgccgcctcgatcgaagacttggagcacctaatggcagccagg
cagcagctgctgattaccgccaagcgctgggactcgtcctgtaaaaccatcgtggaattc
acgcccaacgagacggtggccgacctggagaggagcctgctggcccgctaccagatccct
ctgtcggccgaccagctcttcacccagtccgtcctggacaagacgctgaccaaagacaac
taccaggcccggctgcacgacctgctctacatagaggagatcgctcagtacaaggaagtc
agcaagttcaacatcaaggccaacctccagctggtgaccagcttcatgctaactgggatt
tctgttggagccaagtacgctcagaacggacagctctttgcacgcttcaaactcactgaa
acactttccgaggacactctggctgggagactggtgatgaccaaggtgaattcagttctg
ctgctgccgttggggagggaagggttcggcggtcacgctccttctggggtcaaagagcgc
gtttatgaggctgtcatagaggagaagaccaaggattacatctttctgaggatttgcaag
agctgctgcgaggagctgatgctgcagcctgacagagaaatacaggtggagctccagttt
cagctcaacagacagccactgtgtgagatgcactatgccctggatcgcatcaaagacaac
accatccttttccctgatattggccttgtgcccacaatcccctggagcccaaacaggcag
tgggacgaacagctggacccccgtctgaacgccaagcagaaagaggcagtcctggcgatc
accacacccatctccgtctctcttcccccaatcctcatcattgggccctatggtaccggc
aagaccttcaccctggcacaggccgtcaaacacattcttcgccaggacaacagcagggtc
ctgatctgcactcattccaacagcgcagctgacctttacattaaagactatcttcatcca
tatgtcgaagcaggaaacgaccacgccagacctctcagggtatatttcaggaaccgctgg
gtgaagaccgtccacccggtggtccagcagtactgtctcatctccagcacacaggtcact
ttccagatgcccacaagggaggacatcctcaggcaccgtgttgtcgtggtcaccctcagc
acctcccagtacctctgccagctggatttggagcctgggttgttctcccacatcctgttg
gatgaagcagctcaggccatggagtgtgaaaccatcatgccttttcctcttgctagcaag
accacccgcatcgtgctggctggggaccatatgcagctcagtccgtttgtgtacagcgag
tttgcacgggagcgcaacctgcacgtgtcactgctggaccggctgtacgagcactacccc
cccgaatttccctgtcgcatcctcctgtgcgagaactaccgctcccacgaagctatcata
aactacacatctgagttattttacgacgggaagctaattgcgagcgggaagcagccgtgc
cataaggatttctaccctctgaccttcttcacagccagaggagaagatgtccaggagaag
aatagcactgcctactacaacaatgcagaggtgtttgagattgtggagcgggtggaggag
ctgcgtaagaagtggccggtgtcctgggggaagctggacgagggcagcatcggggtggtg
tcgccgtacgccgaccaggttttccgcattcgtgccgaactccggaagaagagaatgcac
gaggtcagcgtcgaaagagtgcttaacgtccaaggtaaacagttccgggtgctgttcctc
agcacggtgcggacgcggcacacctgcaagcacaagcagaccgccatcaaacgcaaagag
cagctggtggaggattcgaccgaggacctcgactacggtttcctgtcaaactacaagctg
ctcaacacggccatcaccagagctcagtccctggtcgcggtggtgggagaccccatagcg
ctctgctctgttggacgctgcagaaaattctgggagcatttcatctcaatctgccacgag
aactccagcctgcacggcatcaccttcgagcagatcaaggctcagctggaggccctggag
ctcaagaagacgtacgtcctcaacccgctggccccggagttcatccctcgggccctcagg
ccccttcagggacaccagtcctcctcccagggccttcatccccaccatcatcctcatcct
cagcacggagtggctgcctccaacaagcaggccgcgcagcatcaccaacagcagcagcag
cagcagcagtcccctccaaaggggaaacaggcgaaccacacagagcacctcccacctgat
ggatatgtgcaatccagccctgctgtgttgatgggaaaccccatccgggccttcacgccc
cctttgggtgccaatccggccggcatagggaagtcgcccagccccgtgcagcgcatcgac
cctcacaccggagccagcatcctctacgtaccagctatgtacggaggaaacgtggtcatg
cccatgcctctgtcgttgccctggccaggttaccagaaccgctttgctgtggaccctcgc
atcatgagccacccggcggccatggcctacaacttaaacctgcttcagccgcagaaccga
ggctctcccatcccttatagcggcgtggcccacccctctcctttaggactggcccagctc
agcccagagaaggaactgcaggcggacctcatcaggaacggtaaagtagacggctgcaca
aaggccgaacagacccgtcttcagacgccagagaggaaaaacgcagacataagggaaaag
cagggagatttagacaccggtcaaagtcgaagtttagattcccaaccagagggtctggtt
ggctttccgaacgctctgcttcaccgcaaagacccttcagctacccaaagatccctcaac
taccacctggcaccgcccagcccagcttttcctccacaccccgccagcggaagagccttc
ccccagcagtaccccgttcctagacttccctaccgggttggtcagcctccacatccaggg
atgccccaacagaatcagcagcaacagctcagtcctgccttcaccggtggaagccacgct
tccttcttcagcgggtccatggccgctcaccgatccgtgcaatcgcccaccatggacggg
gcggagtcttcgggggccgaggagatgagcggcaccattaggactcacatgggccaccag
ggggcgcaacacccaggcctaccccagcacaacagggtcagcaactttggggaggatgga
caggatggaagtctggtggacggtttagacctccagagtcccatgaccttagaagccctg
agccagcagcagcagcagcagcagcagcagcagcaggcggccagactgggccagtggggg
gaagcagcaggccccttcctccagggcagtgttgcctttcctctgccccagcagctcgcc
cacctcgctcaatctggcatggctcgctttccccctcagctgctccgggctgctacctgg
gggcttggtgccaatatggacgacgaagccgtttcctctgccaccgcgggtccaacgtgc
tccaggtacccgggccttttgagagagatgcccccccaggaacagccggaaccacgggaa
gcgaccgaattgcagccgccgcctcagtcccgcctgctccagtatcgacagtcccagacc
cgtgcctccggcgagccctcgtcctccttagcccccctgtccaatcacgctggccccttc
cccgcaggactgtactcccacgaaagcggccggaacctcctcaacgaaaaccttctcaac
aacccggctctgcagcagcagcagcacccagggaaccccctgtacaatgctggcagctac
ccgaatcagccaccagcgcagtccggcggcagcagccccccaccatcgaacgtgaagtat
ctcctgcaggaagcgcagtggtcccacggcggagcggcgtccgtgtcccagcagaaccac
ctcctagggaaccagagccatagccttctgtacggactgcccctgatggctcaccccagc
aggccggagcaggtgctgatgcaactccaccagcagcagcatcaacagcaacagcaacaa
aatcaaggcctggactctgagtcctaccaccctctgtcccctagaacatcagcagccgct
gccctccacagcgtagacgagtatgaaccgagaggtccaggccggcccctctatcagcgc
cgcatctcctccagctacccggatgaatcgtctccagcccacccctgtcatcccgagccc
caggatcacccccagcaaccgcacggctcctacagctaccccccacacgaccacctctgg
cccagcaacggcgggggtcccggtccattccagaacattccatgcaacggagctagcaaa
ctagttcagcatcgtgagcttctagcttcaaaggtccatcgtcagacggacgagcaggcg
aaggcggaaccggccggcgcgccgcagcagcaggcgcatccacacaacctcaactccctt
cagcaccagtttcccccattaatgcccaataagaagcagcagcagcagcagccgccgccg
cccccgccgccgccacagcctccgacagagcccgcccagggggctcccagtttagtaaag
ccgcccaccatgtcgtacgcgagcgccctccgagcgcctcccaaaccgagagccgttcga
cccgagcaggtgaagaagaacagcgacccgctgtccctcctgcaggagctgagcatcgga
agctcaaacggtagcaacggttattattcttactttaaatga
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