Gambusia affinis (western mosquitofish): 122829418
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Entry
122829418 CDS
T07758
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122829418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122829418
03009 Ribosome biogenesis [BR:
gaf03009
]
122829418
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122829418
Spliceosome [BR:
gaf03041
]
Complex A
U2 snRNP components
U2 related factors
122829418
Complex B
122829418
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122829418
Ribosome biogenesis [BR:
gaf03009
]
Eukaryotic type
90S particles
Helicases
122829418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Apis_Csd
Flavi_DEAD
SRP54
AAA_25
Atrophin-1
nSTAND3
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
122829418
NCBI-ProteinID:
XP_043969887
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Position
LG04:14840025..14849790
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AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSDGRDRDRDRDREDRSRDRDRDRDRDRDRDRDREPKLSAAP
SNSMPSMSSIPPIKQMNMHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKENFSDIITRN
QSFVLVGETGSGKTTQIPQWCVDMVRALPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRQDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHEANQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIASQYYDMSNFPQCEAKRQLERIIAKLESKEYTQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacaccgtttggatttgggcgatgattactcctccagtaagaagcggtct
gacgggagagacagagaccgtgacagagaccgtgaggaccgttccagggacagggatcga
gacagagatcgcgacagggacagagaccgggacagggaacccaagctgtcggcagctccc
tctaacagcatgccgtcgatgtcgagcatacctcctatcaagcagatgaacatgcaccag
cagattaacccattcaccaatctgccacacacgccgcgctactacgagatcctgaagaaa
aggctacagcttccggtgtgggaatacaaagaaaacttcagcgacatcattacacgcaat
cagagctttgtccttgttggagagactggctctggaaaaacaacacagattcctcagtgg
tgtgtggacatggtgagggccttgcctggtcctaagcgggccgtagcttgtactcagccg
cggagagtggctgccatgagcgtagctcaaagggttgcagacgaaatggatgtcatgctt
ggacaggaagtcggctactccatcagatttgaggactgcagttctgccaagactatatta
aaatacatgacagatggtatgttactgagagaagctatgaatgatcctctgctggagcga
tatggtgtgatcattctggatgaggcccacgagcgaactctggccacagacatcctgatg
ggcgtgttgaaggaagtggttcgccaaagacaggatctgaaggtaattgtgatgagtgcc
accctggatgcaggaaagttccaagtgtacttcgacagctgccctctgctgaccattcct
ggacgcacacatcctgtggagatcttctacacccctgaaccagagcgggactacctggag
gcagctattcgtaccgtcattcagattcacatgtgtgaagaggaagaaggtgacgtcctt
ctgttcctcacaggtcaagaggaaattgatgaagcctgtaagagaatcaaacgagaagtt
gacgaccttggccctgaagtcggagacatcaaaatcattccactgtattccacgttgccc
ccgcagcagcagcagaggatctttgagccacctcctccaagaaagccaaacggtgctata
gggagaaaggttgttgtgtcaacaaatatcgctgagacgtcgctaacaattgatggtgtc
gtgtttgtcattgacccgggatttgccaaacagaaggtgtacaatccccgcatcagagtt
gagtctctgctagtcacagccatcagtaaagcttcggcacagcagagggcaggcagagcc
ggcagaacacgtccagggaaatgtttccgcctctatacagagaaggcctacaaaacagag
atgcaggataatacatacccagagattcttcggtccaatttgggatctgttgtgctgcag
ttgaagaagttgggcattgatgaccttgtccactttgacttcatggaccctccagctcct
gaaacgcttatgagagctcttgagcttcttaattacctggccgctctcaacgatgatggt
gacctgaccgagcttggctccatgatggcagaatttccgctggatcctcaactggccaag
atggtcatagccagctgcgagtttaactgctccaatgagatcctctccatcactgccatg
ctgtcagtcccacagtgttttgtccgtcccacggaggctaagaaggcagcggacgagtcc
aagatgagatttgctcacattgacggagaccacttgacgctgctcaatgtctaccacgcc
ttcaaacaaaaccacgaagctaatcagtggtgttatgacaactttgtcaactaccgctcg
ctgatgtctgctgacaatgtacgtcagcagctgtccaggattatggaccgcttcagtctg
cctcggcgtagcacagagtttactagcagagattactacatcaatatcagacgagcgctc
tgcaccggcttcttcatgcaggtcgctcatttggagcgcacaggccattacctcacagtg
aaagacaaccaggtggtccagctgcacccatccacagtcctggaccacaaacctgagtgg
gtgctctacaatgaatttgttctcaccaccaagaactacatccgcacttgcacagacatc
aaaccagagtggttggtgaagattgcatcccagtactatgacatgagtaactttccacaa
tgtgaagctaaaagacagctggagcgaattattgccaaactagagagcaaagagtacacg
cagtactga
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