Gambusia affinis (western mosquitofish): 122829539
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Entry
122829539 CDS
T07758
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gaf03009
]
122829539 (pdcd11)
Ribosome biogenesis [BR:
gaf03009
]
Eukaryotic type
90S particles
Other 90S particles
122829539 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_N
HAT_PRP39_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_N
Suf
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
OB_RRP5
UTP6_C
TPR_16
NRDE-2
TPR_CcmH_CycH
ARM_TT21
RPN7
ARM_TT21_5th
TPR_15
Motif
Other DBs
NCBI-GeneID:
122829539
NCBI-ProteinID:
XP_043970110
LinkDB
All DBs
Position
LG04:complement(20487849..20502376)
Genome browser
AA seq
1805 aa
AA seq
DB search
MASVEEDFPRGGKTKKPTGSKVTVERSKVDNLFQQSDEPTTTKKKKGGTKKVKKQKTEEQ
EGGLTLNTVAESVEILHIKNMREGMLLLGCVKEVADFEVTVSLPCGLQGFLSIRNVCDAY
TKLLSEQLDLEVENEEFCSLSQIFWPGMLLRCVVSKMDITKGGSLSIQLSVNPKLVNKSL
TSSSLMAGMVLSGCVESVEDHGTIIDIGVSGTKAFLPEDATKSKQHKSEELKVGQYVTSR
VEEVKNDGRVVRLSAAARASADAKQGWTLTNLLPGLTVKATVKKVTKHGLHLDFMSSFSG
QVDFLHMEQESSYREGLQVRACVLYIEPTTRLVGLSLRSHLLQPVSDVDAAPPGGDRTGE
VVMECKMTAMHHMSGAMLELPDKTPAFAHRNHLKEPSNPANENKVSAMPEHTCRILDFSP
MEQIYFVSLRKSVIDQRFYRYQDIHPGQVVEGTVSVLLSQGMVVHLSAHVKGLVPRTHLS
DIILKNPEKKYVEGMKVKCRVLSVDVDNKNLRLTRKKTLVESPLPLFLTYNDARPGRVSH
GFIVSVKDFGCIVRFYGNVKGRVPLEELSSEPIVCPEDVFYVGQVLKAKVLKCDPEQEKL
LLSFKAAGKRETEESTEPPIDCEVGKRVEARVAKKSINSLEVVILPDEGRAVLPTVHLSD
HMSNCQLLWEVLQEGDTISNLICFNKNKQNITLTKKPRVISSLEEGAVAKDFSEITVGMQ
LVGCIRNIMSYGVFVEFPYGLIGLAPKSALSDKFISDMTTAFKVGQTVIAKVTNLDEEKQ
RFLVTLKIPEVITPAGDARAALLNGIQERRTVKEMLTVRDDGELRQQLAALTVGQKLKLT
VDSATQDGAKFRFDDLPGADVIASKRHVAGVSLTPGQKASAVILNVDILSSCVHVSVLPK
LLGKKKSLNKGSDCCAVVQFVDRDFAVISLNDAAQLTLLQTCSHPNEVALSEAERLKVGM
TLTVEVVEPSCEQLEGLPLVLWKGNAPKRQRTASENQADSSGHRFGEVLQGKVRSVKPTY
IQVALEDGSTGSVHVSQVVEPAEVTLGSFPTSTVRVGSVVKARVIGGREATSHRFLPFSH
PKFKYTIPELTLIPSQLDPGVDFKPVTSKDKLAGYKPGDEITCFVSKFKSDKKCLEVTSD
PCVTGTVDLLSMITDPKDASHPEKLFKLGQAVRAKVVEASVQPHRFVLSLSGTHKLEKGS
ITLGMVTSVQPQVGLVVKLPFGGTGSVSVTDVADTYRPNPLEAFRKDQLVRCYLLDVQNG
KWHLSLRPSRLNPQSTKPAKDPEVLSLDHLRLDQVVRGYVKTVSEQGVFIRLSHNITGRA
QLQQSSKYFISNHKILSSHLPVNTLLTTKILSVDREDQLVDLSLLPADTGKPDILPESLG
LPLRLVGDAEKRDSKKAKKRLHAESEQKPAEPQIPKKKKKKSSKPKADGDDSGVEVYFRE
EEDEGEEVKRDSAQVSSSSTGPSRLQVAAGFSWDVGLSSLKPVLEAKDGESSDGEEQDGN
EKPQKKTRHELEQDKKSAEKALLQREAELMDPSLRPQDAAAFERLLLASPSSSLLWLQYM
AHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTQESLKKVFERAVQ
FCEPMPVYQQLADIYTNSNKIKEAEGLYKTMVKRFRQNKAVWLSYGTFLLRQGQSDAASS
LLQRALTSLPPKESVDVITKFAQMEFRFGDAERGRNMFDKVLTNYPKRTDLWSVFINLMV
KHGSQKEVRAVFDRTIHLSVSVKKIKFFFKRYLEYEKKHGTPQSVQAVKEKAMEFVEAKG
KDAAN
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggtagaggaggattttcctcgtggaggcaaaacaaagaagcccacaggcagt
aaagtcacagtggagcggagtaaagtggacaatctgtttcagcagtcagatgaaccaacg
acaacaaagaaaaaaaagggaggcaccaagaaagtcaaaaagcaaaagacagaagagcaa
gaaggtggcctgacgcttaacactgttgctgaaagcgttgagattctgcacataaagaac
atgagagaagggatgctgttactgggctgtgtgaaggaggtggccgactttgaggtgacc
gtcagcctcccgtgtggcctgcaaggcttcctcagcatcaggaacgtctgtgatgcctac
accaagctgctgagcgagcagctggacttggaggttgaaaacgaggagttctgctctttg
tcccaaatcttctggccgggaatgctgctccgatgtgtggtttccaaaatggacatcact
aaaggaggctcgctcagcattcagctgtcggtcaatccgaagctggtcaacaagagcctc
acctcgagctctctgatggctggaatggtcctgagtgggtgcgtggagagtgttgaagat
catggcactataattgacattggcgtgagtggaacaaaagccttcctgcccgaggatgct
acaaagagcaaacagcataaaagtgaagagcttaaagtgggtcagtatgtgacttctcgg
gtagaggaagtaaagaacgacggccgcgtcgtccggctctccgccgcggctcgggcctcc
gctgacgccaaacagggctggactctcaccaacctcctgccgggcctcacagtcaaagct
accgttaaaaaggtgaccaaacatggcctgcacctggacttcatgtcctccttcagcggc
caggtggattttctgcacatggagcaggagtccagctacagagaggggcttcaggtgcga
gcgtgcgttctgtacattgagccaaccacccgcctcgtcgggctgagcctgcgcagccac
ctcctgcagcccgtgtccgacgtcgacgccgctcctcccggtggggaccggaccggagag
gtggtgatggagtgcaagatgaccgcgatgcaccacatgtcgggggccatgttggagctg
ccggacaaaaccccggcctttgcgcataggaaccatctgaaggagccaagcaacccggcc
aatgaaaacaaggtctctgcgatgcccgagcacacctgcaggatcctggacttcagcccc
atggagcaaatttattttgtcagcttacgaaagagcgtgattgatcagcgattttataga
taccaggatattcaccccggccaagttgtagaggggacggtgtctgtcctgctgagccaa
gggatggtggtgcatctgtcggcgcacgtcaaaggcctggtgcctcggacgcacctctct
gacatcatcctgaaaaacccggagaagaagtacgtcgaggggatgaaggtcaaatgtcgg
gtgctgtcggtggacgtggacaacaagaatttacgtctgacccggaagaaaacactggtt
gagagccccctgccgctgttcctcacctacaacgacgctcgtcccggccgggtgtcccac
ggcttcatcgtgtctgtcaaagacttcggctgcatcgtccgtttctatggcaacgttaaa
ggtcgggtcccgctggaggagctcagctctgagcccatcgtctgtccggaggacgtcttc
tatgttggacaggtgctgaaggccaaagttcttaaatgtgacccagagcaggagaagctg
ctgctgtcatttaaggcggcgggaaagagggagacggaggaatctaccgagcctccgatt
gactgcgaggttggaaagagggtggaagcaagggtggcgaagaaatccatcaacagtctg
gaggtcgtcatcctcccagacgaggggcgcgccgtcttacccacagtgcatctctccgat
cacatgtccaactgtcagttgctgtgggaggtcctgcaggaaggagacaccatttcaaac
ctcatttgctttaacaagaacaagcagaacatcacgctcaccaagaaaccaagggtgata
tcgtcactggaggaaggagcggtggccaaagatttctctgagattaccgtggggatgcag
ctggttggctgcatcaggaacatcatgtcctacggcgtctttgtggagttcccctacggt
ctcattggtcttgcacccaaatctgccttgtcggataagttcatcagcgacatgacgacc
gccttcaaggtgggccagacggtcatcgccaaggtgaccaacctggatgaagaaaagcag
cgattcctggtcacgctgaagatccctgaggtcataacgcctgccggggacgcccgggcc
gcgctcctgaacggcatacaggagagacgaactgtgaaggaaatgctgactgtcagagat
gacggtgaactccggcagcagctggccgctctgaccgtcggccagaagctgaagctgacg
gtggattcagccacacaggacggggccaaatttaggtttgacgacttgcctggtgctgac
gtcatcgccagtaaacgccatgtggcgggagttagcctgacccctgggcagaaagcgagt
gcggtcatccttaatgtcgacatcctgtctagttgtgtccatgtttccgtcctcccaaag
ctgctggggaagaagaagtctctgaataaaggctcagactgctgtgcggtggtgcagttc
gtcgaccgggactttgctgtcatctcgctaaacgatgcggcgcagctgactctgctccag
acctgcagccacccgaacgaggtcgccctgtccgaggcggagagactcaaggtggggatg
actctgacggtggaagtcgtagaacccagctgcgagcaactggaagggctccccctggtg
ttgtggaagggcaacgcgccaaagaggcagcgtacggcttcggagaaccaggcggactct
tcgggacaccgcttcggcgaagtcctgcagggcaaagtgaggtcggtgaagcccacctac
atccaggtggcgctggaggacgggagcacgggcagcgtccacgtgtcgcaggtggtggag
ccagccgaggtcacgctggggtccttccccacgtccacggtgagagtgggcagcgtggtc
aaagccagggtcatcggaggacgagaagccaccagtcacagatttcttccgttttctcac
cccaaattcaagtacaccattcctgagctcacacttatacccagccaactggatcctggt
gtggattttaaaccagtgacatcaaaagataaactggccggctataagcccggcgacgaa
atcacatgtttcgtatcaaagtttaaatcagacaagaagtgcttggaagtcacctctgac
ccctgcgtcacagggaccgtggacctgctttccatgatcacagatcctaaagatgccagc
cacccagaaaaactgttcaagctcggccaggcggtccgcgctaaagtggtggaagcgagc
gtccagcctcatcgctttgtgctgtcgctctcagggacccataaactggagaaaggcagc
attacattgggaatggtgaccagtgttcagccgcaagtcggcctcgtggtcaagctcccc
tttggcggcaccggatcggtttctgtcactgacgtcgctgacacctacaggccaaaccct
ctggaggcgttcaggaaggatcagctcgtcaggtgttaccttctagatgtgcagaatgga
aagtggcacctgtccctacgtccatcacggctgaacccacagagcaccaagccagcgaag
gacccagaagtcctgtctttggaccatctgcggctggaccaggtggtccgaggttatgtg
aagactgtgagtgagcagggggtcttcatcaggctgtcgcataacatcacaggaagagct
caacttcaacagtcctccaaatacttcattagcaaccacaagatcctctctagtcacctt
ccggtcaacaccctcctcaccacaaaaatcctcagtgtggacagggaggaccagttggtc
gacctctctcttctccccgcggacaccggaaagccagacatccttccggaatccctcggc
ctcccgctgcgtctcgtcggagacgcggagaagcgcgactcaaagaaggcaaagaaacgt
ttgcacgccgagagcgaacagaaaccagcagagccccagatcccgaagaagaagaaaaag
aaatcaagcaaaccaaaagctgatggtgatgacagcggagtggaggtctacttcagagaa
gaggaggatgagggggaggaagtaaagcgtgattctgctcaggtgtcttccagctcgacg
ggtccgtccaggctgcaggtggcagccggcttctcctgggacgtggggctgagctccctg
aagcccgtgttggaggcaaaggacggtgagtccagcgacggagaggagcaagacggcaac
gaaaagccccagaagaagacgcgccacgagctcgagcaggacaagaagtcagcggagaag
gccctcctgcagcgggaagccgagctgatggacccgagcctccggccgcaggacgcggcc
gccttcgagcggctgctgctcgcctcgcccagcagctcgctgctctggctccagtacatg
gcccaccacctgcaggccacgcagatcgagcaggcccgggcggtggccgagagggccctc
aaaaccatctccttcagggaggagcaggagaagctgaacgtgtgggtggccctgctgaac
ctggagaacatgtacggaacccaggagagtctgaaaaaggtgtttgagcgagccgtgcag
ttctgcgagcccatgcccgtgtaccagcagctggccgacatctacaccaactccaacaaa
atcaaggaggcagagggtctgtataagaccatggtgaaacgtttccggcagaacaaagca
gtgtggttaagctacgggaccttcctgctccggcagggccaaagtgatgccgccagctct
ctcctgcagagggcgctgacgagtctgccccccaaagagagtgtggatgtcatcaccaag
ttcgctcagatggagttccgcttcggcgacgctgaaagaggtcgcaacatgttcgacaaa
gtcctgacgaactacccgaaacgcacggacctctggtccgttttcatcaacctcatggtg
aaacacggatcgcagaaggaagtgagggccgtcttcgatcggacgatccacctcagcgtt
tccgtgaagaagatcaagttcttcttcaagcgctacctggagtacgagaagaagcacggc
acccctcagagcgtccaggcggtcaaagagaaggccatggagttcgtggaagcaaaaggc
aaagatgctgcaaactga
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