Gambusia affinis (western mosquitofish): 122829544
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Entry
122829544 CDS
T07758
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122829544 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122829544 (taf5)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122829544 (taf5)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122829544 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
122829544 (taf5)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122829544 (taf5)
STAGA complex
122829544 (taf5)
TFTC complex
122829544 (taf5)
SAGA complex
122829544 (taf5)
SLIK complex
122829544 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
Beta-prop_DCAF12
CDK5RAP3
LisH
Beta-prop_WDR11_2nd
LisH_PAC1
VPS8_N
PROPPIN
Motif
Other DBs
NCBI-GeneID:
122829544
NCBI-ProteinID:
XP_043970130
LinkDB
All DBs
Position
LG04:complement(20504353..20510888)
Genome browser
AA seq
746 aa
AA seq
DB search
MAAVQGSIVDAKEEADIKSEPATDGFGNNHANEAGVLSASPGSSAAAGNNKPAAGAPEDQ
QTLLAVLQFLRKNKLSESAEILRREAGLPEEVLDPKGADSAGSGLGSGADIDGGDASALL
SRVTVSAAGGAKAPTKAAGEDQPDVNVVLSAYSQQGDPALYEVYYSGLKKFIESVLDCHR
AELSQVFYPLFVHMYLELVYNNHEGEAKAFFEKFSGDQECYYEEDLRILSSLTKKEHMRG
NETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQID
AMSGSLAGEAKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDSTGSK
SKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKESTKRIRLGPDNLPSICFYTFLNAYQGL
TAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRKVKTAADLNLIDKESDDVLERIMDDKTA
SESKCLYGHSGPVYGISFSPDRNYLLSCSEDATVRLWSLLTFTCLVGYKGHNYPVWDTQF
SPYGYYFISGGHDRVARLWATDHHQPLRIFAGHLADVTCTRFHPNANYVATGSSDRTIRL
WDVLTGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMVGELKGHTEC
IYSLRFSRDGEILGSGSMDNTVRLWDAMKAFDDLETDDFTAATGHIHLQDNSQELLLGTY
MTKSTPVVHLHFTRRNLLLAAGAYNP
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtacagggtagtatagtcgacgcgaaagaagaagccgacattaaatcagaa
ccagcgaccgatggcttcggaaataatcacgccaacgaggcgggagtgctctctgcgtcc
cccggctctagtgctgcggctggaaacaacaagccggcggcgggagcccccgaggaccag
cagaccttgctggctgtgctgcagttcctcagaaagaacaaactgtcagagtccgcagaa
attctgcgtcgcgaggcgggattgccggaggaggttctggatccaaagggggctgactca
gccggttctgggctgggaagtggtgcggacatagatggtggggatgcaagcgctttgctc
agccgggtgaccgtctctgctgccggcggagctaaggcgccaaccaaagcagccggagag
gatcagccagacgtcaacgtggttctgtcggcctacagtcagcagggagacccagctctc
tatgaagtttactacagcggcctgaagaagttcatcgagtccgttctggactgccacaga
gccgaactgtctcaggtcttctaccctctgtttgtccacatgtacctggaactggtctac
aacaatcatgaaggcgaggctaaggccttctttgaaaagttcagcggggaccaggagtgc
tactacgaagaggacctacgcattttgtcaagccttacgaagaaggagcacatgagaggg
aacgagactctgctggatttccgcaccagcaagttcgttttgcgcatctcccgcgactcc
taccagctgctgaagaggcacctgcaggagcgccagaacaatcagatatggaacataatc
caagagcacctctacatcgacatcttcgatggcatgccgcgcagcaagagccagatcgac
gccatgtccggcagcttggctggagaggccaaacgagaagcaaataaggccaaggtttac
tatggcctgctgaaggagccagaaattgagcttccccttgatgatgaggatgaggaagca
gagaacgaggaaggtaaacccaagaagaaaaagcccaaaaaggacagcaccggctccaaa
agcaagaagcaggatccaaatgctccttcacagaccaggatacctctaccagaactaaaa
gactcagacaagctggacaagatcatgtacatgaaggaatccaccaagagaattcgtttg
ggacctgacaacctgccctccatctgcttctacacctttctcaacgcataccagggttta
actgcggttgacgttacggacgactccagtctgatcgcagggggcttcgctgactccacg
gtacgggtgtggagcgtcacgccgaagaagctccgcaaggtcaagaccgccgcagatttg
aatctgattgacaaagagtcagatgatgttcttgagaggattatggacgataagacggcc
agtgagtcgaagtgcctctatggacacagcggaccggtgtatggcatcagcttcagccca
gacagaaactacctgttgtcgtgctctgaagacgccacggtcaggttgtggagcctccta
acgttcacctgtctggtgggatacaaaggccacaactacccagtgtgggacacgcagttc
tccccttacggatattattttatctccggggggcacgaccgggtcgcccgcttgtgggcg
accgatcaccaccagccgctgcggatattcgccggtcacctggccgacgtcacttgcacc
cgtttccaccccaacgcaaattacgtggccacgggctcgtcggaccgcaccatccgcctg
tgggacgtcctcaccggaaactgcgtccgtatcttcaccggtcacaagggtcccatccat
gcgctggcgttctctcctaatgggaagtttttggcctcgggagccactgatggcagagtc
ctcctgtgggacatcggtcatggactgatggtcggagagctcaagggtcacacagagtgc
atctactccctcagattcagcagggatggagagatcctcggctccggttctatggacaac
acggttcgcctgtgggatgcgatgaaagcgtttgacgatttagaaacggatgacttcact
gcggctacgggacacatccacctacaggataactcccaggagcttctgctgggcacctac
atgaccaaatcaacacctgtagttcatcttcacttcacacggaggaacctgcttctggct
gcaggcgcttataatccataa
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integrated database retrieval system
