Gambusia affinis (western mosquitofish): 122829731
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Entry
122829731 CDS
T07758
Symbol
slx4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
122829731 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gaf04121
]
122829731 (slx4)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122829731 (slx4)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
122829731 (slx4)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122829731 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
Med9
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
122829731
NCBI-ProteinID:
XP_043970448
LinkDB
All DBs
Position
LG04:22999767..23012771
Genome browser
AA seq
1436 aa
AA seq
DB search
MDDSELDFVDLCSKLLKRVRKKEPGRPRRKGEQQSSSQATRGEKRTVDKQDEDSLSGFSA
TGSEVVCGGTGRDSGDAVQSSAFPPAEADLRAKDKVLLRMQEFKRASPQKMIHSNRVEPA
KTDDYPLTAQHQKSDKAAAPCSELPDSDEALALRLQRELDREAAEAQMVDLEDGGLFFCQ
ICHRDLSHMTPDGRTHHLNRCLDQNEQSAPSLPPPSAVPDCPICGKKFKSQKSRSAHLKR
CSADMGVSTAVLLQALQRQAEESHSSAVGANAHLETGGIKRKGPPQSELPARKKPRKKAD
RLDEDTMVALALSSSLLEQQKEQQVQRGPSHSSVTPLLTWRPDAAKGRVKKKKVAVPRPP
PLLLVQDAETALARLQERVSALLLRRRSPSPPTPTRCPSKLPDWTGAAPLWRKSALLGGG
STCLSQFYAAELRHLFTTADLSKPDAVLSSSSNKPESSDPPALPSCSQTASSSPSTPETG
ELHVGSQAIRDLMELAEDGMTLTQYGYADNAKHPSGFIQEEELEDQAEASDGAASSSRAV
RRSDQPEADRNAARQESVALSRLSSDLSSMVNNPQLSDVQLQVDSGEVYFAHSFMVYARC
PLLAEMVHESGFGVQEEGTAAAQRVLLSDVPGPAVLAVLRYLYTARCSVAASLRPHVLEL
ASRFDLQELQRLCRFQPENMAAGDDGLDVNQDENVHNQTDQTFVELLRSMWNEEDSDGDA
GDSDGGGRSEDEVAAGDGEIGEERVNEEELEEIYEFAATQRQRVTEEEEKKEEEEDAEPE
PGSDRSYSRLFSQSWGVYQDGEASSSPPLRPHEAALKHSARTLLQSSASVADEPSLNLPV
PGPSPGRPAQGDGHGRGEEAAAESQARRSAPPSPARRDEAELIVLSDSSEEAEADRSFTG
IKPDQNPSPRESVCGSQFSPGDPAGCSPELSWLVPSTPFRSPVRNTKTASMQTDSSMCRT
RLFPRVDPSPLASPSRNTVPTSSTPLKASAERRVSPDKRKRTEAFAAHRSFRDSSKHEAP
PQPRSISSTPLHADPERQSTSGQMKARTRVSSPSGQPSSAESSLQPGVSDMNQVTSVPDV
TDSSFQQSFMDEPPIAFNDSWGLDACGDGDPGGFSLKLDDTEEGGRPGVSSPTATGSVQS
PAAGPGPLTTSEVQNDLLDSKIWGSWEGDGGAGEEKDEEEEGLPPTQRANPAARLKTPKS
REEKRRRPLVPITPTPHYSDMDTPELKNKLSSFGVRPXKLKEIHQYTHQLTSSEEEEEEE
GPLGRAASCARFKEPTAPAAAASPARTDREEAGDRLSASQGSNASSSSTAASDESERSNP
ELVLSSDGDSDGDASSSQAASRLQDRLQAVRSFILSDSDLYSRILQYQPLVLSQLQQRLK
AAGVRLGAAKLVDYLDSQCITFTTAKPGQQAAGRGRGAWTGRGARGGGRRSRALKR
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atggatgattccgagctggattttgtggacctctgctccaaattgctgaagcgcgtccgc
aagaaagaaccaggcagaccgaggaggaagggagaacagcagagctccagccaagcaacc
cggggggagaagaggacggttgataagcaggatgaggattctctgtccgggttttcagcc
actgggtcggaggtggtctgtggaggaactgggcgtgactcgggggatgctgttcagtct
tctgcttttcctccagctgaagcagacctgagggcaaaagacaaagtactcctcaggatg
caagagtttaagagagccagtccacagaagatgatccacagtaaccgagtcgagccagca
aagaccgacgactatcctctgactgcacagcatcagaaatcagataaggcggcggcgccc
tgctctgagctcccagacagtgacgaggcgctggccctgcggctgcagcgggagctggac
agggaggcggcagaggcccagatggtggacctggaggacggaggccttttcttctgtcag
atctgccaccgggacttgtcacacatgacccccgacgggcgcacacatcacctcaacagg
tgtttggatcagaacgaacagagcgcgccgtctctccccccgccctccgctgtccccgac
tgtcccatctgcggcaagaagttcaagagccagaagagccgctcggcccacctgaagcgc
tgctccgcagacatgggcgtctccacggccgttctgctgcaggctctgcagagacaggcc
gaggagagccacagttctgccgtcggcgccaacgcacacctagagacgggcggcatcaaa
aggaaagggccgcctcagtcggagcttccagcaaggaagaagcccaggaagaaggccgac
cggctggacgaggacaccatggtggctctggctctgtcctcctccctgctggagcagcag
aaggagcagcaggttcagaggggtccgtctcacagctccgtgactccactgctgacgtgg
aggccagatgctgctaaaggacgtgttaaaaagaaaaaagtagccgtccctcgtcctccg
cctctcctcctagttcaggacgcagagacggccctggcgaggctgcaggaacgagtctct
gctctcttgctacgccgccggtcgccgtctcctcccaccccgacgcgatgccccagcaaa
ctgcccgactggacaggtgctgcccccctctggcggaaaagtgcactgctgggtggaggc
tccacctgtctgtctcagttctatgctgcggagctccggcacctgtttaccacggcggat
ttatcaaagccagatgcggtcttatcaagcagcagcaacaagccggagtcttctgaccca
cctgccctgccctcctgctcccagacagcgtcctcatctccctccactccagagacgggt
gagctccacgtgggaagccaggccatccgagacctgatggagctggctgaagacggcatg
actctgacccagtacggatacgccgacaacgccaagcaccccagcggctttatccaggag
gaagagttggaggatcaggccgaggcgtcggacggcgccgccagcagcagccgggcagtg
aggaggtcagatcagccggaggccgaccgaaacgcagccagacaggagtcggtggcgctc
tccaggctgtcctcagacctgagcagcatggttaacaaccctcagctcagtgacgtgcag
ctccaggtggacagtggagaggtctactttgcgcattccttcatggtgtacgctcgctgc
cccctgctggctgaaatggtgcacgaaagtgggttcggtgtgcaggaggagggcacggcc
gcagctcaaagggtgttgctaagcgacgtgccgggtccggcggtgctggctgtgctgcgg
tacctctacaccgcccgctgctccgtcgccgcgtcgctgcggcctcacgtgctggagctg
gcgtccaggtttgacctgcaggagctgcagcggctgtgtcgtttccaaccggagaacatg
gcggcgggagacgacgggctcgacgtaaaccaggacgaaaacgtccacaaccaaacggac
cagaccttcgtggagctccttcgatccatgtggaacgaggaggactcggacggagacgcc
ggggactcggacggagggggacggtcggaggacgaggtcgccgcgggcgacggagaaatc
ggcgaggagcgagtgaacgaggaggagctggaggagatttacgagtttgccgccacgcag
aggcagagggtgacggaggaagaggagaagaaggaggaggaggaagatgcggaaccggaa
cccggctcggaccgcagctacagtcggcttttctcccagtcctggggcgtctaccaggat
ggagaggcttcctcctcgcctcctctccgtcctcatgaagcggcactcaaacactctgcc
aggactctgcttcagtcgtcggcaagcgtcgccgatgaaccctccctcaaccttcccgtc
cccgggccgtctccggggcgaccggctcagggggacggacacgggagaggcgaagaagcc
gcagcagaaagccaagctcgtcgcagcgcccccccctcgcctgcgaggagagacgaggcc
gagctcatcgttctgtccgactccagcgaagaggcggaagccgatcggagcttcacgggg
atcaaacccgaccagaacccgagtcccagagaatcggtctgtggttcccagttcagtccc
ggtgatcccgccgggtgttcgccggagctttcctggctcgtcccttccacgcctttcagg
tctccggtcagaaacacgaagaccgcctccatgcagaccgacagcagcatgtgcaggacg
cggcttttccccagagtggacccgtcccccctcgcctcgccgtccaggaacacagtcccg
acctccagcactcctctgaaagcctccgcagaacgcagagtctctcctgacaaacgaaag
agaaccgaagcgtttgcagcccaccgttcctttagagattcctcaaagcacgaggctcct
ccgcagccgcgcagcatcagcagcacgccgctgcatgcggacccagagaggcagagcacg
tctggccaaatgaaagcgaggacacgtgtgtccagtccttcaggtcagccctcgtccgcg
gagtccagtttgcagcctggcgtcagcgacatgaaccaagtaacgtctgtcccagatgtg
acggactctagtttccagcaaagtttcatggacgagcctccgatagcttttaacgactcc
tgggggctggacgcctgcggcgacggcgacccgggcggcttcagcctgaagctggacgac
accgaagagggagggagacccggagtgtccagtccaacagctacaggcagcgtccagagc
cctgctgcaggtccaggcccgctgaccacgtcagaggtccagaacgacctgctggactcc
aaaatatggggcagctgggagggcgatggaggagcaggagaggagaaagacgaagaggag
gagggtcttcctccgactcagagagcgaacccggcggctcggctcaaaactccaaaatcg
agggaagagaaacggcggcgccccctggtgcccatcacccccacgcctcactactctgac
atggacacgccggagctcaagaacaaactcagcagcttcggcgtgcgtcctnngaagctg
aaggagatccaccagtacacccaccagctgaccagctctgaggaagaggaggaggaagag
gggcccctgggcagggcggcctcctgcgcccggttcaaagagccgacggcgcccgctgca
gccgcgtcccccgccagaacggaccgagaggaagccggcgatcggctctctgcctcccag
ggctcaaacgcctcctcctcctccaccgccgccagcgacgagtcggaaaggtccaaccct
gagctggttctctcctccgacggcgactcggacggcgacgcgtcgtcctctcaggccgct
tcgcgcctccaggaccgcctccaggcggtgcgctccttcatcctgtccgactccgacctg
tacagccggatcctccagtaccagcctctggttctctcccagctccagcagcggctgaag
gcggcgggggtccgcctgggcgccgccaagctggtggactacctggactcccagtgcatc
accttcaccacggccaagccgggccagcaggcggccggccgcgggcggggggcctggacg
ggccggggggcgagaggaggcggcaggaggagcagagctttaaaacgctaa
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integrated database retrieval system
