Gambusia affinis (western mosquitofish): 122829934
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Entry
122829934 CDS
T07758
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122829934 (col17a1a)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Cyt_c_ox_IV
Motif
Other DBs
NCBI-GeneID:
122829934
NCBI-ProteinID:
XP_043970795
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Position
LG04:complement(1794295..1813342)
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AA seq
1506 aa
AA seq
DB search
MDKVTAVKVVSSGGGAAASSSSGVVKTSVTSSGVTSQSDFSFSSGGSAFGRVAAGGSEGT
SSSVLIQSSSSHRSGSGPGNVRIATVGTSSAQSSGERSGASGASAASGASGRGERSKEAG
GGSSNMSYSFGSGSRETKKGGGLGAVTVSTVTKSSYTSGGSREGKKGSSSSGITYSPPPK
ERKSVTTMAAALSDVFDESSDSSLEYSRKEYGSSTATSATRGRTQSRESEIRARLQSASP
PARWTELDDVKRLLRGNRSTSTSPTQSPNNTLPIPKKASVEAKATSESSSGPIDQYGSVW
SGDVSSGYYSSNNYTSTSHLHPSGAGVQNNLTLGSPSVNAGKSVSSSVPVYGVQNNLTSP
TVFLPAGASSQIVYGVQKNVSGITAPIVRPSSPTIYEASGKDFNFVLIEKENGPIKKETE
RLVMAKDTGKHFVSTAPATFSGTYSEDSLKREKQKLLSSAVDEGTDANSSTLKSTTKDKA
TYAEIHKDELGFGFFSCCSWWKWLLALVFTLLLLLGLLIGLITLGEQVRRLKKRVDALEA
TGGVSTSFLLATSGNVIDAENSEYTERTSSGSTLTQSDNSINLGPAGGTGTRTEQDRANL
ERTVQQVLRAELQSNAMRETLAYSLKGEKGEPGPKGDPGAFGQKGDSGFPGLPGPPGQIG
HSGLDGPRGPKGNPGEPGPEGQPGQRGREGPTGPRGESGPPGVGQKGDKGSQGEPGHPGS
AGAPGPLGPKGAAGEQGVSGAPGVPGPKGFQGEAGPSGAKGDRGSPGVPGIKGDNGERGS
RGPMGEPGTPGPQGPSGPKGSKGSGGESGSIGLPGARGLPGLPGDVGPQGPPGIQGPPGV
AGIPGQPGGKGEPGSPGKVIGPINSDTVAIPGPPGPAGPPGSAGPPGLSGPIGPAGVPGQ
PGTKGERGDKGEKGDKGDQGQRGEPGTGLPGPQGLPGSPGEPGPQGPPGEGKQGPPGRRG
PPGDPGVGTPGPRGEKGEPGSFLPTSETFFAGPPGPPGPPGKEGAQGFQGEPGQTGLPGT
PGDPGFPGPPGPPGPPGGPVTAGGEPGSSFIPGPPGPPGPPGPPGSESPAIGQYIANYLQ
SDSIRQYLAGPPGPPGEPGSPGVSEDALVDSVASRVISYIQSSGPGVPGPPGPPGSVSVN
DIISLLQRDEVRGYLMGPPGPPGPPGGPSISGFPFNPQEVAERVYSLLNQRGALGAPGAP
GPPGPPGPPGHLLATGFQSLIGPPGPPGAQGAPGPQGPPGPPGPPGFGSYVSTDIRDYLQ
SVALRGPQGPPGPPGPEGPPCPIGQMLSFTDHNNRDMLKPERQKYEFDGGDGLSRPMFGP
PGPPGPPGPPGHKGEPGLGSNTEWDPNSIDLSIMAERLTDYIKAHGVLDGIVENYNSRIF
QGPPGPPGPPGPAWFGSHGNATNIMEIIEAVRQQSRHGPPGPPGPPGESRLFGSHTNVVD
IMDYIKAHGVIVGPPGRPGPKGDQGLPGRTGAKGERGYPGPQGYRGPKGDRGDFSLTTRR
RRSSGL
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggtgacagcagtgaaggtggtgagctcaggtggaggagctgcagccagcagc
agctcaggtgtggtcaaaacgtcagtgacatcctctggagttacatcacagagtgatttt
tctttcagctccggtgggtcagctttcggaagagttgcagcaggaggatcggagggaacg
agcagttcagttctgatccaatctagcagctcccaccgcagtggatctggacccgggaac
gtacgcatcgccaccgtaggaacttcttctgcccagtcctcaggtgaaaggtcaggggcc
tcaggagcctcagcggcctcaggggcctcagggagaggagagcggtctaaagaggccgga
ggagggtcctctaacatgtcctacagttttggaagtggaagcagagaaactaaaaaagga
gggggtcttggtgctgtgaccgtttccacggtgaccaaaagcagctacacatcaggaggg
tccagggaagggaagaagggctcatcatcctctggcatcacgtactcacctcctccaaag
gagaggaagagtgtgaccaccatggcagctgctctgtcagacgtctttgacgaaagctca
gattcttccctggagtacagcaggaaggagtatgggagttcaactgcaacttcagccact
agggggagaactcaaagcagagagagtgagatcagagccaggcttcaaagtgcttcacct
ccagccagatggacggagctggatgatgtgaagcgcctgctgaggggaaaccgctccacc
agcaccagccccacccagtcccccaacaacacactgcccattcccaagaaggccagtgtg
gaagccaaggccacgtctgagagctcctcaggtcccatcgatcagtacggcagcgtttgg
tcaggggatgtgagcagtggatattacagctcaaacaactacacctctacctcccatctt
cacccgtcaggtgcaggagtccagaacaacctgactctcggctctccctctgtgaacgcc
ggaaaatctgtcagcagctccgtgccagtatacggcgtgcagaataacctgaccagtcca
acggtctttttgcccgctggtgccagctcacagattgtttatggtgtgcagaaaaatgtc
tctggaataactgcacccatagtgagacccagcagtcccaccatttatgaggcctcaggg
aaagacttcaactttgtgctgatagagaaggagaacggtcccatcaagaaggagacggag
cggctcgtcatggccaaagacaccgggaagcactttgtgtccactgcgcctgccactttc
tcaggcacttactctgaggactcgctgaagagggagaaacagaaacttttgtccagcgca
gtggatgaaggaactgatgccaattcttcaaccttgaaatctaccacaaaagacaaagca
acttatgcagagatccataaagacgagttgggttttgggttcttctcctgctgcagctgg
tggaagtggctgctggccctcgtcttcaccctgctgctcctcctggggctactcatcgga
ctcatcactttgggtgagcaggtgagacgcctgaagaagcgtgttgatgctctggaagcc
actggcggtgtatcaaccagcttcctgttggctacctccggcaacgtcatcgacgcagag
aactcagaatacactgaaagaacctcttctggttccaccctcacccaatctgataattca
atcaacctcgggcctgcaggaggcacaggaaccagaacagaacaggacagagccaaccta
gagagaaccgttcagcaggtgctcagggccgaactacaatcaaatgctatgagagaaact
cttgcttattctctaaaaggagagaagggagaaccaggacctaaaggtgatccaggggca
tttggacaaaaaggcgatagtggatttcctggactgccaggtcctcctggacagattgga
cactcaggcctggatggaccaaggggaccaaaaggaaatccaggtgaaccaggtccagaa
ggacaaccagggcagaggggacgggagggaccaacgggcccccggggggagtctggaccg
cctggtgttggacagaaaggagataaaggttctcagggtgaaccaggacatcctggttct
gctggagctcctggaccccttggtccaaaaggtgctgctggagagcagggtgtctctgga
gccccaggcgtgcctggtccaaagggattccaaggtgaagctggaccttccggagccaaa
ggtgaccgtggatccccaggtgttccaggaattaaaggggacaatggagaaagaggatct
cgtggaccaatgggtgaaccaggaactcctggacctcaaggcccatctggaccaaagggc
tctaaaggaagtggtggtgaatcgggttcaataggacttcctggtgctagaggtttaccg
ggtctgcctggtgatgtcggtccccaaggtcctcctggaatccaaggacccccaggtgtt
gcaggaattccaggccagcccggtggtaaaggtgaaccaggatctcctggcaaagtcatc
ggtccgataaactctgacactgtggctattcctggacctccaggaccagctggacctcca
ggttctgctgggcccccaggtttgtctggtcccattggtcctgctggggtcccaggccaa
ccaggtacaaagggagaacgaggggataagggagagaagggagacaagggggaccaaggt
caacgtggagagccagggactggccttcctggaccccaagggctcccagggtccccaggt
gaacctggacctcaggggcctcctggtgagggtaagcaggggcccccgggccgcagaggc
cctcctggagatccaggtgttggaactcctggacctcgaggagagaaaggagagcctggc
agcttcttgccaacatctgaaaccttctttgctggaccaccaggacctccaggtccacct
ggtaaagaaggagcacaaggattccaaggtgaaccaggtcagacggggcttccagggact
ccaggggacccagggttcccgggacctccaggacctccaggacctccaggtggcccagtt
acagcaggaggggaacctggaagttcattcattcccggaccacctggaccacctggacca
cccggaccacctgggagtgaatcacctgctattggccagtacattgctaactatctccag
agcgacagcatcagacagtacttggctggacctcctggacctcctggagaaccaggttct
cctggtgtgtcagaagatgccctggtggatagcgtagccagtcgagtgatctcctacatc
cagagttccggtccgggggtgcctggtcctcctggcccacctggatccgtctctgtcaat
gacatcatcagtctactgcaacgagatgaagtgagggggtaccttatgggtccaccaggc
ccaccaggacctcctggaggtccaagtatcagtggcttcccgtttaacccccaggaagtg
gctgaacgcgtctacagcctcttgaatcagagaggggcgctgggtgcacctggagctcca
ggacctcctgggccaccgggccctcctggacacctgttggcaactggatttcagtctctt
atcggccctccaggaccccctggtgcacagggtgctcctgggccacaaggtccgcctggc
ccccccggaccgccaggatttgggagctatgtcagcacggacatccgtgactacctgcag
agtgttgccctcagaggccctcaaggccctccggggccccctggaccagagggccctcct
tgtccaatcggacaaatgctttcttttacagaccacaacaacagagacatgctgaagcct
gaaagacaaaaatatgagtttgatggtggtgatggtttgagtcgacccatgtttggacct
cctggtccaccggggccccctggacctccaggacacaagggagagccaggtttgggcagt
aatactgagtgggacccaaactctattgacttatccatcatggctgaaagactgactgat
tacatcaaagctcatggcgttctggacggcatcgttgagaactacaatagcaggatcttc
cagggtcctccaggcccacctgggcctccaggccccgcctggtttggttcccatggaaac
gccacaaatattatggaaattatcgaagccgttaggcagcagagccgccatggaccacct
gggcccccgggtccaccaggagagagccgactgtttggttctcacaccaacgttgttgat
ataatggactacatcaaagcccatggagtgattgtgggaccaccagggagaccgggaccg
aaaggggaccaaggacttccaggacgaacaggagcaaaaggtgaacgaggttatcctggg
cctcagggatacagaggaccaaagggtgacagaggagatttctcactgacaaccagaaga
aggagaagctctggtctttga
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integrated database retrieval system
