Gambusia affinis (western mosquitofish): 122830031
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Entry
122830031 CDS
T07758
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45 isoform X1
KO
K03678
exosome complex component RRP45
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122830031 (exosc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122830031 (exosc9)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122830031 (exosc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
122830031
NCBI-ProteinID:
XP_043970995
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All DBs
Position
LG04:complement(17243087..17252382)
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AA seq
434 aa
AA seq
DB search
MKDTPLSNCERDFILKAIEEKKRLDGRQTYDYRKIKITFGTDYGCCFVDLGQTRVMAQVS
CELVVPKENRPNEGVMFFNLELSPMASPAFEQGRQSELSVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHTLNNDGNLMDAASVAAIGALCHFRRPDVSIQGEEVTVYSPEER
DPIPLSIYHMPISVSFAFFQQGTFLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKEQVMRCSKIASVKVSEITELINKALLNDKTARKAGGRCGFAESMPQERITALKTDQ
IAVEMTDVSETASSIVQTAEAPPQTVPSPSVPVPGVGQVGEGLRNTWGLEEEEEEEENGG
ESSGGDSVEEVTKMDVQQHQENKSRTVDVVEILDSDEEEEEVVILYPETPKKPKNAGSSS
GQKGAGASRKQKKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacacaccactgtccaactgtgagcgggacttcatactgaaagccatcgaggag
aaaaagcgcctggatgggcgacagacgtatgattacaggaaaataaaaatcacttttggg
actgactatggatgctgctttgtggatctgggacaaaccagggtcatggcccaggtgtca
tgtgaactggtggtgccaaaggaaaatcgtccgaacgagggagtcatgttcttcaacctg
gagctgtcgccgatggcctccccggcttttgagcagggaagacagtcggagctgtcggtg
aagctgaacagacagctggagagatgcctgaggaactccaagtgcattgatacagagtcc
ctgtgtgtggtgtctggagagaaggtgtggcagatcagagtggacgtccacacgctgaat
aacgacgggaacctgatggatgccgccagcgtggccgccatcggcgctctgtgccacttc
agacgacccgacgtcagcatccagggagaggaggtcacggtgtacagtccagaggagaga
gaccccattcctctgagtatctaccacatgcccatcagcgtcagcttcgccttcttccag
cagggaaccttcctgctggttgacccgtgtgagcgggaggagcgagtgatggacggcctt
ctgatgatcgccatgaacaaacacagagagatctgctccattcagtccagcgggggcatc
atgctactgaaagagcaggtgatgagatgcagtaaaatagccagcgtcaaggtgtctgag
atcacagagctcatcaacaaagctctgctaaacgacaagactgccaggaaagcaggtggg
aggtgtggttttgcggagtccatgcctcaggagcgaatcacagctctgaaaacggaccag
atagccgtggagatgaccgacgtcagtgaaacagccagtagcattgtccagacagccgaa
gccccacctcaaacggtgccatccccatcggtgccggtcccaggggtcggacaggtaggg
gagggtctgcgcaacacctggggcctggaagaagaggaggaggaggaggagaatggtggg
gagagcagtggaggagacagtgtggaggaagtgacaaagatggatgtgcaacagcatcaa
gaaaacaagagcagaacagtggatgttgtggagatattagatagtgatgaagaggaggag
gaagtggtcatcctttatcctgagacaccaaaaaaacctaaaaatgcagggtccagttct
ggccagaagggggcaggagcatccaggaaacaaaagaaaaaatga
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