Gambusia affinis (western mosquitofish): 122830140
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Entry
122830140 CDS
T07758
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03030
DNA replication
gaf03410
Base excision repair
gaf03420
Nucleotide excision repair
gaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122830140 (rfc1)
03410 Base excision repair
122830140 (rfc1)
03420 Nucleotide excision repair
122830140 (rfc1)
03430 Mismatch repair
122830140 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaf03032
]
122830140 (rfc1)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122830140 (rfc1)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122830140 (rfc1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122830140 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_17
AAA_5
RuvB_N
Rad17
AAA_33
AAA_14
AAA_16
AAA_7
BRCT_2
Herpes_UL25
nSTAND3
NTPase_1
AAA_18
RNA_helicase
AAA_19
Motif
Other DBs
NCBI-GeneID:
122830140
NCBI-ProteinID:
XP_043971185
LinkDB
All DBs
Position
LG04:8556523..8567089
Genome browser
AA seq
1168 aa
AA seq
DB search
MSSMDIRRFFGPVSGKPAPNVDRKPDEKKKKKSSSEEDVKKKKKEGSKAKSSKNEEQHKS
SEKKRKKRQVIESDSDEEEPVMKAKKSSKGKTVTSKADPPPKKDPVQYVSETDSDSDNFQ
SLKASKSKQNGSNKKSEEDSCSPKAKERVKSPAKPPLSRGKTEIKSPKVPTTPKLAPPPP
PKQTPTSVLDYFGSGEIHRSDKKLVASTKRKAPTQELDDLISDEELARQLQMEEDMEQVE
KQVHEDEEFARTLAMLDTEPQPKKARKNSEEKPSPSTTPKKSSVGVPSKTSRSPPEDAIS
PSPQKSPAAVRASSKLAMMKKRDEAKDEGAKSKTPTSPRKNRISPKKEPRASSISDMKFT
PKAGTTPTALKTSPKKPESTSTSPDDAEKKKMHTLAFRNYLNRDGPRALGSKEIPEGAEN
CLEGCVFVLTGVLESMERDDAKALIERYGGKVTGNVSKKTNYLVLGRDSGASKLDKAESL
GTTILDEDGLLELIRTKPGKKSKYEIAAEAECKASKTRTPPSETSKVTPKAQKISPSKGN
SRSPQTPSPSKTGQAQRARASGSRTPTGQKARRELGLPYASSSSSAPGPSPPSPQGDAAG
LLWVDKYRPRSLKSVIGQQGEQSCANKLLRWLQNWHRHHSGGPDKPAASRFGKFGGGKDD
GSGYKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNNTSIE
NFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNSKIPIICMCNDRNHQKIR
SLANYCFDLRFQRPRVEQIKGAMMSLAYKEGIKIPPPALNEIILASNQDVRQVIHNLSMW
SAKDKVMTYDRCKSDAASARKDMKLGPFDVCRKVFASGEETAHMGLIDKSDLFFHDYSLA
PLFVQENYLHVRPAAARGDMKSHLVLLSKTADSIADGDLVDRRIRSSQNWSLLPTQAIFA
SVLPGELMRGYMSQFPVFPSWLGKNSSTNKHSRIVQELTAHMSLKTLSSRQAVNLDYTHY
LRQALLHPLQRHGADGAAQAVQLLDDYQLLKEDVDSIMEISVWGGQPDPYSKLDSKVKAA
FTRAYNKEVHLTPYSLQAVKKGRRGGGGADLDGGDEGPDDQESGDEAEGLKADAMIKQKK
TKTTKESTKEKKQESGKGKGKGKGKAKK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcatggacatcaggcggttctttggaccggtatcaggtaagcctgcgccaaat
gtagaccgaaaaccagacgagaagaagaaaaagaagagttcctcagaagaagatgtgaaa
aagaagaagaaggagggctctaaggccaaaagctccaaaaatgaagagcaacacaaaagc
agcgagaagaaaagaaagaaacgccaagttatagaatcggattcagacgaggaagagcca
gtgatgaaggctaagaaatcctccaaagggaaaactgtgaccagcaaagcagatccgcct
cctaagaaggatcctgtgcagtacgtctctgaaacagattcggacagtgacaactttcag
agtctgaaggcctccaagtccaaacagaacggctctaataaaaagtcagaagaagacagt
tgcagtcctaaagccaaagagcgagtcaagtctcctgctaagcctcctttgagtcggggg
aaaactgagataaagagtcccaaagttcctacaacccctaaactagcccctccccctccg
cctaagcaaactcccacctctgtactcgactacttcggcagcggagagattcaccgctca
gacaagaagctggtagccagcaccaaacgaaaggctccgactcaagagttagacgacctg
ataagcgacgaggaattggcccggcagctgcagatggaggaggacatggagcaggtggaa
aagcaagtccatgaggacgaggagtttgccagaacgttggccatgctggacaccgagcca
cagcccaaaaaagctcgcaaaaactctgaggaaaaaccaagtccgagcacgacccccaag
aagagcagcgtgggcgtcccgtcgaagaccagtcggtctcctccggaggacgctatcagt
ccgtcgccccagaagagtcccgctgccgtcagagccagctccaagctggccatgatgaag
aaacgggacgaggcgaaggatgaaggcgcgaaaagcaaaacgcccacttcaccgaggaaa
aacagaatctctccgaaaaaagagccgcgtgcttcatcaatttcggacatgaagttcaca
cccaaagcaggaacgacaccaacggcgctgaaaacgtctcctaagaagcccgagagcaca
agtacaagtcctgacgatgcagagaagaagaagatgcacactctagcgttcaggaattac
ctcaacagagacggaccacgagcgctgggatccaaggaaatcccagagggagcagagaac
tgtttggaggggtgtgtgtttgtgctgactggagtcctggagtcgatggagagagacgac
gccaaagctctcattgagcgttacggaggcaaagtgacgggaaacgtcagcaagaagacc
aactacctggtgctgggcagagacagtggagcgtccaaactggacaaggctgagagttta
ggcaccaccatcctggatgaggacggcctgttggagttgatcagaaccaaaccaggaaag
aagtcaaagtatgagatcgctgcagaagctgagtgcaaagcctcaaaaaccagaactcct
ccaagtgaaacctcaaaggtcacccccaaggctcagaagatctccccctccaaggggaac
tccaggtccccccagaccccgagcccctcaaagacgggccaggcacaaagagccagagcc
agcggcagcaggactccaactggacagaaggcccggagggagctgggccttccttatgca
tcctcctcttcctcagctcctggaccctcccccccttccccgcagggggacgctgccggt
ctcctgtgggtggacaagtaccgtccacgttctctgaagagtgtgatcggccagcagggg
gagcagagctgcgccaacaagctgctccgctggctgcagaactggcacagacaccacagc
ggaggaccggacaaacccgcagcatcgaggtttggtaaatttggaggagggaaggatgac
ggatcaggatacaaagctgctctgctctctgggcctccaggggtggggaagaccaccaca
gctgccctggtctgtgaggagctgggcttcagctacgtggagatgaacgccagctgcact
cgcagcaaaaacagcctgaaggaagtcgtggcggagtcgctcaacaacaccagcatcgag
aacttctacaaaggaacgtctcagacggtgagcagtaagcacgtcctcatcatggacgaa
gtggacggcatggctggaaatgaagaccgaggaggaatccaggaaatgatcggcctgatc
aaaaactcaaagattcccatcatctgcatgtgcaacgaccgcaaccaccagaagatcaga
tcgttggccaattactgctttgacctgcgcttccagaggccgcgggtggagcagatcaag
ggagccatgatgtctcttgcttataaagagggaatcaagatccctcctccggctctcaat
gaaatcatcttggcctccaaccaggacgtgcgacaggtgattcacaacctgagcatgtgg
tcggccaaagacaaggtgatgacgtacgaccggtgcaagtccgacgcggccagcgcccgc
aaggacatgaagctggggccgttcgacgtctgcaggaaggtgttcgcctcgggagaagag
acggcccacatgggtctcatcgacaagtccgacctcttcttccatgactactctctggcg
ccgctctttgtccaggagaactacctgcacgtccgtccggctgcggctcgcggagacatg
aagtcccacctggtgctgctcagtaagaccgccgactccatcgccgacggcgacctggtg
gacagacggatccggtcgagtcagaactggtccctacttcccactcaggccatctttgcc
agcgtgttgccaggcgagctcatgagaggctacatgtctcagttccccgtcttccccagc
tggctgggcaagaactcctctaccaacaaacattcccgcatcgtgcaggagctgaccgca
cacatgagcttaaagaccctgagcagcagacaggcggtgaacctggactacacgcattac
ctgcgccaggcgctgctgcatccgctgcagaggcacggagcggacggagcggcgcaggcc
gtgcagctgctggacgactaccagctccttaaggaggacgtagacagcatcatggagatc
agtgtgtggggcgggcagcccgacccctactccaaactggactccaaggtgaaggcggct
ttcactcgggcgtataacaaggaggtccacctgacgccgtattccctccaagctgtgaag
aagggccggcgaggaggaggaggagcggatcttgacggaggagacgaaggtccagatgac
caggagtctggggacgaagccgagggcctcaaagcagacgccatgatcaaacagaagaag
accaaaacaactaaagagtcgacgaaggagaagaagcaagagtctgggaagggcaaaggc
aaggggaaaggcaaagcaaagaaatga
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integrated database retrieval system
