Gambusia affinis (western mosquitofish): 122830238
Help
Entry
122830238 CDS
T07758
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122830238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122830238
03009 Ribosome biogenesis [BR:
gaf03009
]
122830238
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122830238
Spliceosome [BR:
gaf03041
]
Complex A
U1 snRNP components
U1 related factors
122830238
Complex B
122830238
Ribosome biogenesis [BR:
gaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
122830238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
122830238
NCBI-ProteinID:
XP_043971378
LinkDB
All DBs
Position
LG04:13188157..13200786
Genome browser
AA seq
637 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKFQ
KNFYQEHLDVTHRPLQEVEEYRRNKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNFT
EPTPIQSQGWPVALSGKDMVGIAQTGSGKTIAYLLPAIVHIQHQPFLEHGDGPICLVLAP
TRELAQQVQQVTAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCD
ELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVEDVKFVIN
YDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDLISVLREANQAINPKLIQMA
EDRGGRGRGGRGGYRDDRRDRYSGGRSNFGGGGGYRDRDGDRGFGNGPKTAFGGSKAQNG
GNYGGNNSNSSGNYGNSNYSNSNGQGNFSAPPNQGGAGGFGNQNFQGPPQFGGMQRPAQN
GVNHPPFPFNSQPPPQNQQPPPPPPMVPYPMPPPFPQ
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagaccggggcagagatagagggtatggtggcggccctcct
cgtttcggtggtggtggtggaggaggcaacaggggaggccctcctccaggaaagtttgga
aaccccggagaaaggctgaggaagagacactggaacctggatgagcttccaaagtttcag
aagaacttctaccaggaacacctggacgtcacacacagacctctgcaagaggttgaagag
tatcggagaaacaaagaagtcacagtgaaaggcagagattgtcccaaaccgatcgtcaaa
ttccatgaagctgcttttccaagctacgtcatggatgttattgttaagcagaacttcact
gaaccgactccaatccagtcccaggggtggccagtcgctctgagtggcaaagacatggtg
ggcatcgctcaaactggctctgggaaaaccattgcttatcttctgccggcaattgttcac
atccaacatcagccgttcttggagcacggagacggacccatttgcttggttctggcgccg
acccgggagctggctcagcaggtgcaacaagtgactgctgaatatgggagggcttctcgt
ctcaagagtacctgcatctatggtggcgcaccaaaagggccacaaataagggacctggag
aggggagtggagatttgcatcgctactccaggccgtctcattgatttcctggagtgtggt
aaaaccaatctgcgtcgttgcacctacctggtgctggatgaagccgaccgcatgctggac
atgggctttgaacctcagatccgcaaaatagtggaacaaattcggcctgatcgtcagact
ctgatgtggagcgccacctggccgaaagaggttcgtcagctggctgaggacttcctgaag
gattacgtccagatcaatattggtgcactgcagctcagtgccaatcataacatcctgcag
atagttgatgtctgcaatgacctggagaaggaggacaagctgatccgtttgttggaggag
ataatgagcgaaaaggagaacaagaccattatttttgtggagaccaagagacgttgtgat
gaactcaccaggagaatgagaagagatggttggccagcaatgggtatccatggagacaag
agccagcaagaaagggactgggttcttaatgagttcagatttggcaaagctccaattctg
attgctacagacgtggcttcccgtggtttagatgtggaggatgtgaaatttgtcatcaat
tatgactaccctaactcctccgaggactatatccaccgcattggccgcacggcccgcagt
caaaaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaggccggcgac
ctgatctctgtgctgcgcgaggctaaccaggccatcaatcccaagctcatccagatggca
gaggacagaggaggtcgcggacgggggggaagaggtggctacagggatgaccgtcgtgat
aggtattcaggcggcagaagtaacttcggtggcggcggcggctacagggacagggacggc
gatagagggttcggcaacgggccgaaaactgcctttgggggaagcaaagcccaaaacggt
gggaattacggaggcaacaatagcaattctagcggtaactatggcaacagcaattacagc
aatagcaacggacagggtaactttagcgctccaccaaaccaaggcggcgctggcggcttt
ggtaaccagaacttccaaggcccccctcagtttggcggcatgcagaggcccgctcagaac
ggcgtgaaccacccgccgttccccttcaactctcagccgccgccacagaaccaacagcca
ccgcccccgccaccgatggtgccctacccgatgccgccgccattccctcagtaa
DBGET
integrated database retrieval system
