Gambusia affinis (western mosquitofish): 122830365
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Entry
122830365 CDS
T07758
Name
(RefSeq) RNA exonuclease 5-like isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122830365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gaf03009
]
122830365
Ribosome biogenesis [BR:
gaf03009
]
Eukaryotic type
Pre-60S particles
RNases
122830365
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNase_T
DEDDh_C
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
122830365
NCBI-ProteinID:
XP_043971605
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Position
LG04:complement(27984398..27994905)
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AA seq
823 aa
AA seq
DB search
MERSSSPNVPNGKKKRQSEAPSAQEVVKRRKTEEEGVEDLQRRPCGPAKVSVHLDRLQQP
ITVAQLMELLHFAALGKSRGIKQPSWCRLRHQKKVNGINVAIVDGVTQSLFYNHYLSMEH
LRSSYTTRITFTPSSDDVASDIFSLEVPKVDSSSVAPPEEALHEALKDHPVITTYGTQKK
GLTAYLLSRQQMIKYRYPVKGLPGFEDFLCTGSDDRVTDDSPLYGLDCEMCQTLKGNELT
RVSLVDGDGNCLLDDLVKPQNHVVNYLTRFSGITAAMLKPVTTMLRDVQAKIKTLLPEDA
VLVGHSLNNDLKALKLIHRHVIDTALLYRREHGQKFKLKVLAKAVLKRRIQTEDQKGHNP
TEDAVAALDLAWYFIGMGPLQVVELHLEELWGWSLEDSPSSTSESTQNYRFADVLQSLNR
SVIYLGKRSNVDLDPSFQRWYRSDKEMLSSFRNQTSHFFLSVLRFSSVSAHLNGSYVHCH
HQQQLRHDVSSVFQDMCTVFAGPFPANFSKSQVRQLFGCCGPVHKVRMCNTGVRIHAKVQ
FQMLEGAMLALQVLNGFSVSGQTIKVQRPVKESMLDLDLNLDTLMGDRVNANQLYVSRLT
QDVAGGLNVSAAVNGHLSDGKPPGFHPGKQTNGQLQTAKVNGKQLRPGTFAPDLSEESLK
EAFSPFGSIKSITLPGTHAKHALIEFESSDGKQAARGSSEDLLKKGYPTWPSMTPPHLRS
WVGMATSRETEDKDEDEDEDEERSDSFNCGGTQRNQEVSLLNKLDRRLSKLFNSLPDGTL
SVVLLLEHNSRGFDHPGLCFLEVKNGKEHIQEKPTSRKSPENS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctcctcgtctccaaacgtcccgaacggcaaaaagaaaagacaaagcgaagct
ccgtctgctcaggaggtcgtcaaaagaaggaagactgaggaggaaggcgtcgaagacctc
cagcgtcggccttgcggtccagcgaaggtgtcggtacatctcgaccgcttgcagcagccg
atcaccgtggcccagctgatggagctgcttcatttcgctgctctggggaaatccaggggt
atcaaacaaccgagttggtgtcgtctccgccatcagaagaaggtcaacggtataaacgtt
gcgatcgtggacggcgtgacgcagagtctcttctacaaccactacctttcgatggagcac
ctccggagcagctacaccaccagaattacattcactccatcatctgacgatgtggcatcc
gacatcttcagccttgaagttccgaaagtggattcttcatctgttgctccaccagaggag
gcacttcatgaagctctgaaggatcacccagttatcacgacgtatggcacacagaagaag
ggactgactgcatatctgctcagccgccaacagatgataaaatatcgctatccagtcaag
ggtcttccaggtttcgaggactttctgtgcacaggcagcgatgacagggtaactgatgac
agcccgctgtatggactagactgtgaaatgtgtcagacattgaaaggaaatgagctgact
cgtgtttctctggtggacggtgatgggaactgcttactggatgatctggtgaaacctcaa
aaccatgtcgtcaattacctaacgaggttctcaggcatcactgcagccatgttaaaaccg
gtcaccaccatgctgcgggacgtccaggcgaagatcaagacactgttaccagaagatgcc
gttctggtgggccactcgctcaacaatgacctcaaagcactcaaactcatccaccgtcac
gtgatcgacaccgccctgctgtaccggagagaacacgggcagaagtttaagctgaaggtt
ctggccaaggcggtgctgaagaggcggatccaaaccgaggaccagaagggccacaatccc
accgaggacgccgtggcagcgctggacctagcctggtacttcatcggaatggggccgctc
caggttgtggagcttcacctggaggagctgtgggggtggagcttagaggattcgcccagc
tccacatctgaatccacacaaaattacaggtttgcagacgttttgcagagcctcaaccgc
tccgtcatatatctgggaaagcgctccaacgttgatctggacccgtcctttcagcgttgg
tacagatctgacaaagagatgctgtcctccttcaggaatcagacgagtcactttttcctg
tccgtccttcgcttttcatcggtttcggcccatctgaacggaagctacgttcactgtcac
caccagcagcagctgcgtcacgacgtttcttcagtcttccaggacatgtgtaccgtgttt
gccgggccgttcccagccaacttttccaaaagtcaagtgaggcagctgtttggttgctgc
gggccggtccacaaggtccgcatgtgtaacacgggagtcaggatccacgccaaggtgcag
tttcagatgctagaaggagcgatgctcgctttacaagttctgaatgggttcagcgtgtcg
ggtcagaccattaaggtgcagaggccagtcaaagaatcaatgctggacttggatctgaat
ctggacactctgatgggcgacagagttaacgccaatcagctttacgtcagtagactgact
caggacgtggctgggggactgaacgtttctgctgccgttaacggccatctgtcagatggg
aaaccaccaggtttccatcccggcaaacaaacgaacgggcagctacagacggctaaagta
aacggtaaacagctgcgtcccggcaccttcgcaccggacctgagtgaggagagcctcaaa
gaggcattcagtccctttgggtcaataaaaagcatcaccctgcctggtacacatgcaaag
catgcactcattgagtttgagagttctgatggcaaacaagcggcacgcggctcctcggag
gacctgctgaaaaaggggtatccaacatggccgtctatgactccgccacacttacgttca
tgggttggcatggcgacatcgagggagacggaagacaaagacgaggacgaggacgaggac
gaggagagatctgactcatttaactgcggtgggactcagaggaatcaggaagtgagtctc
ctgaataaactggaccgccgactgagtaaactcttcaactcgctcccagacgggaccttg
tctgtggtgctgctgcttgaacacaacagcagaggtttcgatcatcctggtttatgcttt
ttggaagtcaaaaacggaaaagagcacatccaggaaaagcccacatccaggaaaagccct
gaaaactcctga
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