Gambusia affinis (western mosquitofish): 122830550
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Entry
122830550 CDS
T07758
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122830550 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122830550 (cnot3a)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122830550 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122830550 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122830550
NCBI-ProteinID:
XP_043971876
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All DBs
Position
LG05:complement(19913148..19926605)
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AA seq
899 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRYHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSCQDPDFEENEFLYDDLDLEDIPPALVA
TSPSGNVEDDMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSQVSQSPVK
NGAPSFQSSFSSSATSGSSSSSSLSMASVVGGIPAVPTSSSLIGSFSSAVQQHQHQSAQQ
QQQSQPSNPSQQQQQPPQTKPSAPSNNNNPSPPSNPLLPASTAPSLSTPSTPSLTAPNSQ
SSPGPTPASSLGLGLGLDLRKGGMSGTSSANQMPSLGLAGHSTPLNTMAGLIQGSTSALY
AHAAAAGGLGLSSTTQSSILSESSTSISNSSSSGVTTNGAGSGLSLLGSSPNHNSLTGSI
LGLVPGQSVAPATSQVPPSPVSSAPGSVGMMVGNGGNAGVVGVNAAPARPPSGLKQNGSP
SYSAVVAESSTESALSTLSQSQSSQTSSLSSSTSQPMDNGPSLISSITLPPSSPSPSFSD
STPGGGSLLNGPHSYPQASEGLKAPEPLSSLKAMAERAALGSGLDGEISNMHVNDIFSGS
SAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLSKDQLYQQAMQEAAWTHMPHPSDSERI
RQYLMRNPCPTLPYHHQVPPHHSDTIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaagaaaactacaaggtgaaattgacagatgtttgaaaaaagtagcggaa
ggtgttgaacagtttgaggacatctggcaaaaactccacaatgcagctaatgcgaaccag
aaggaaaaatatgaagctgacctcaagaaagagattaaaaaattacagcgattgagagat
caaataaaaacatgggtggcctcgaacgaaatcaaagacaaacggcagctagtagagaac
cgaaaactaatagagacgcaaatggagcggttcaaagtggtggaacgtgaaacaaaaaca
aaagcctactctaaagaaggcttaggacttgctcagaaggtggatccagctcagagggaa
aaggaggaaacgggacagtggctaacaaatacaatagacacactaaatatgcaggtggat
cagtttgagagcgaagtggagtcactttcagtccagacgcgaaaaaagaagggtgacaaa
gagaagcaagatcgcattgatgaactaaagcggttgattgagaggcatagataccacatt
cgcatgttggaaactattttacggatgctggacaatgactctgtaccggtggatgctatc
cagaagatcaaggatgatgttgagtactacattgattcctgtcaagacccggactttgag
gagaacgagttcctgtatgacgacttagacctggaagacatccctccggcattagtcgcc
acgtctccatcaggcaacgtggaagatgacatgtatctccactctagcagcactcccacc
tcaactacatcttcttcacccatccctccatctccggccacttgcactgctgagaactca
gaggacgataagaaaaggggacggtcgacagacagtcaagttagtcagtcgcctgtgaag
aacggtgccccatcctttcaatcttccttctcttcttccgccacctctgggtcttcttct
tcctcctccctctccatggcgagcgtcgttggaggcattcccgccgttcccaccagcagc
agtctcataggaagtttcagcagcgcggtacagcagcatcagcatcaatctgcacaacag
cagcaacagtctcagccgtcgaatccgtcgcagcagcagcagcagccgcctcaaacaaaa
ccgtcagctccctcaaacaacaacaaccccagcccgcctagcaacccacttctcccagca
tccaccgccccgtcactctccacgcccagcacacccagtttaacagctcccaactcccag
tccagccccgggccgactccggcgtccagcctaggactggggctgggcttggatttaagg
aaaggcggcatgagcgggaccagcagtgccaaccagatgccgagtttaggcctggctggc
cacagcactcctttaaacacaatggccggtctgattcaaggctccacgtcggccctctac
gctcacgcggcggcggctgggggcctgggtctgagcagtaccactcagtccagcattttg
tcggagagtagcacttccatctccaattcgagttccagcggggtcaccaccaacggagcg
gggtcggggctcagcttgctgggctccagcccgaaccacaactctctcactggcagcatc
ctgggtctggtccctgggcagagcgtggcccccgccacatcacaggtgcccccaagtcct
gtcagctctgcccccgggtccgttggcatgatggtaggaaacggagggaacgccggtgtg
gtcggagtgaacgccgctcccgccagaccgccgagcggactgaagcagaacggaagccca
agttacagcgctgtagtggcagagagctccacagaatcagctctaagcacactgagccag
tcacagagcagccaaacctcgtcactcagttcctcaaccagccagccgatggacaacggc
cccagcttaatcagctccatcacactgccccccagctctccctcgccctccttctcagac
agcacaccgggcggtgggagcctcctcaacgggccccactcgtatccgcaggcctctgag
ggcctcaaggctccggagcccctcagctctctgaaggcgatggctgagagagcagcgctg
ggatcgggattagacggagagatttccaacatgcatgtgaacgatatcttctctggttcg
tcggcagcgcccggcacacccgccgctcctcagccgtccgtgtcggaggtcagcatcccc
ccctcgctcggggtctgtcccctgggcccgactcctctctccaaagaccagctgtaccag
caggccatgcaggaggcggcgtggacacacatgccacacccttctgactccgagaggatc
aggcaatacctgatgaggaatccctgccctactttgccataccaccatcaagtcccgccg
caccactctgacaccatcgagttctaccagaggctgtccacagaaactctcttcttcatc
ttctactacctggagggcaccaaggctcagtatctatctgccaaggctctgaagaaacaa
tcatggaggtttcacaccaagtacatgatgtggtttcagaggcacgaagagcccaagacg
atcactgatgagtttgaacagggcacttacatttacttcgactatgagaaatggggccag
aggaaaaaagaagggttcacctttgagtacaggtacctcgaggacagagacttgcagtga
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