Gambusia affinis (western mosquitofish): 122830738
Help
Entry
122830738 CDS
T07758
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X1
KO
K06749
sialic acid binding Ig-like lectin 10
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122830738
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
gaf04091
]
122830738
Lectins [BR:
gaf04091
]
I-type lectins (Siglecs)
122830738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
V-set
Ig_5
Ig_4
Ig_6
Ig_VEGFR-1-like_5th
V-set_CD47
C2-set_2
Izumo-Ig
C2-set
DUF3881
Motif
Other DBs
NCBI-GeneID:
122830738
NCBI-ProteinID:
XP_043972316
LinkDB
All DBs
Position
LG05:complement(27360717..27368348)
Genome browser
AA seq
668 aa
AA seq
DB search
MFILSWLILLFTSSSSGSNTSMINDSGAATLSMSNVTGNDSGQYVCTTQNQDRKLTVDKA
VPYVKTPTISGKTTIKQGEGLNLTCTVDSFPLSVITWSKRGINQTLNNETKYGTSTLVIH
NVTEQHSGQYVCHANHLNKTLEQDINITVINVWEMKITGEPTVREGSTLNLTCTVDSFPL
SVITWSKRGINKTLNNETKYGTSPLVIHNMTEQHSGQYVCHANHLNKTLEQDINITVINV
WEMKITGESTVREGSTLNLTCTVNSSHSIPITWVKLGMNKTLTNETGIKVGTSSLIIQNV
TISNSGQYSCTTIFESQVQDINVTVTYWRMPEITGDIVVTGHVLNLTCSVDSWPLSLITW
TKSNSSTVLKNDTGSATLLIFNVVAENSGLYICTSEHLNISFTKEVHIKVKMQPQILDKS
GCKSQQDVLTCVCISQGFPSPTITWKLSNHVDYSFNTVVSNHTVTSTVSINIKGVSNISA
VCFSSNTNGQTSRNLSVNEVEDEGQITNFLQTFTQMGIIIPFLVGVLVSAFIFSWLWLCC
RKKHKSHGRTSETLEMTNGGHTVDYEPILARGTAGGSNDPEAGTSDIEYSDIHLLIANPL
EKKPKKEDTEYAKINPKKESKMEEGEGREEEEEIKLCVPEAEESETVAVYSNVKKLKDQM
KETLTLAD
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttattctctcctggctaattttactcttcaccagttccagctcaggctccaacaca
agcatgatcaatgacagtggagcagccaccctctccatgagcaatgtgacaggaaacgat
tctggtcagtacgtttgtacaacacagaaccaggacaggaaactaacagtggacaaagca
gtgccatatgtaaagacaccaacaatcagtggcaaaactacaattaagcaaggtgaaggt
ctcaatctgacctgcactgtcgacagttttcctctatccgtcatcacatggtccaaacgt
ggcatcaaccaaactctaaacaatgaaactaaatatggaacatcaactcttgtgattcat
aacgtgactgaacagcattctggacagtatgtttgtcatgcaaaccatctaaacaaaacc
ttggagcaagacattaacatcactgtgataaatgtatgggaaatgaagatcacgggagaa
ccaactgttagagagggaagtactctgaatctgacctgcactgtcgacagttttcctcta
tccgtcatcacatggtctaaacgtggcatcaacaaaactctaaacaatgaaactaaatat
ggaacatcacctcttgtgattcataacatgactgaacagcattctggacagtatgtttgt
catgcaaaccatctaaacaaaaccttggagcaagacattaacatcacggtgataaatgta
tgggaaatgaagatcacgggagaatcaactgttagagagggaagtactctgaatttgacc
tgcactgttaacagctcccactctattccgatcacttgggttaaactcggcatgaacaaa
accctgaccaatgaaactggaattaaagtcggaacatcctccctcatcattcaaaatgtg
acaataagcaactctggacagtattcctgtacaacaatatttgagtcacaagtccaagac
ataaatgttactgttacttattggaggatgcctgaaataactggagacattgttgttaca
ggccatgttctgaatctgacctgcagcgtcgatagttggcctctttctttaatcacctgg
accaaatctaactcgagcacagtgttaaaaaatgacactggctcagccacacttctcatt
ttcaatgtggtagctgaaaacagcggattgtacatttgcacatcagaacatctgaacatc
agctttaccaaggaggttcacataaaagtgaaaatgcaacctcagatcctagataagtct
ggctgtaagtctcagcaggatgtcctgacctgtgtgtgcatcagtcagggctttccttca
cccacaattacatggaaactatcgaatcacgtagactactccttcaacactgttgtgtca
aaccacacggtcactagcaccgtctccataaatataaaaggcgtctccaatatttctgct
gtttgtttcagcagtaatacaaacgggcaaacaagcaggaatctttctgtaaatgaggtg
gaagatgaaggacaaatcacaaactttctacagactttcacacagatgggtataataatt
ccctttttggtcggggttttagtttcagcatttattttctcctggttgtggctgtgctgc
aggaaaaagcacaagtctcatggaagaacatctgagactctagaaatgacaaatggtggt
cacactgtggattatgagcccattctggccagagggacagctggaggatccaatgaccca
gaagctggaacatcagatatagaatattctgatattcatttgttgattgcaaacccttta
gagaagaaaccaaagaaagaagacacagagtatgctaagattaatccaaaaaaagaaagc
aaaatggaagagggagaagggcgagaagaagaggaggagataaaactctgtgtgccagag
gctgaggagagcgagactgtagcagtgtattctaatgtgaaaaaactgaaggatcaaatg
aaagaaacattaactttagcagattga
DBGET
integrated database retrieval system
