Gambusia affinis (western mosquitofish): 122830782
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Entry
122830782 CDS
T07758
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gaf00535
]
122830782 (col14a1a)
Proteoglycans [BR:
gaf00535
]
Extracellular matrix (ECM) proteoglycans
Others
122830782 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
VWA_3
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
122830782
NCBI-ProteinID:
XP_043972382
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All DBs
Position
LG05:complement(12428652..12545179)
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AA seq
1787 aa
AA seq
DB search
MLRMLLMGEVRWCFLAPLVLLVFVSCDPSKTQGQVPAPRRLRFKVHSSRKLLVSWREPRG
DVDSYLFLYNSLPGGQQREIIVSKSDPKVLITDYNPSKDYIISVIAIRGREQSRPLRGRF
KAKPAAGGESDKEDESEPQRLTDSDGPPDDANEISGADQFVCHTAAIADIVILVDGSWSI
GRINFKLVRIFLENLVNAFDIGIDKTRIGLAQYSGDPRIEWHLNTYSTKEAVIDAVKNLP
YKGGNTLTGLALNFVSDYCFKPEAGSRVGVPKIGILITDGKSQDDVVPPAESLRKAGVEL
FAIGVKNADENELRSIASEPHHTHVYNVADFNIMSSIVEGLTKTVCEQVELQDKDIKQKF
TPEKTEMPLNLETSEVTAQSFRVSWSPAAGNVEMYRVVYRPAQGGEPQEAVVAGSETSVV
LKHLSSLTEYQLAVFAVYTDEASEALRGSETTLALPSVASLQLFDATHSTMQARWSRVDG
VSGYMLLYAPITDDGDLNNEINVADGVTEVELVGLTPDTVYTVTVYAMYGEEASEPKTNQ
ETTLPLSPPRNLQFSDVTHNSAHISWDSPPDGVKGYRIMWVMTDGLVTKEVKVGPVNSYD
LSELASLMEYSVAIFALYNEGQSEPLTDGFTTTPVPGPLNLHSSDVSTGSFKVSWDHSAT
DIALYRLSWAPFSGGDTREVFLIESENSYTVDGLSPSTKYEVLLTAIFEDESESDTVSVI
ETTLAITTTIHTTTTVTRKAVKNLYLSDETTQSLEASWELEDTDVQSYRISYTDLSANQE
EETISVGGGQKSALLQPLLPDTQYKVTVTPVYVDGQDGISASALGSTLPLLSPENLRVSE
ESYNRFRVSWDLPQSPTEGYRIVYRPIHVQSPVLETTVDEDVNSILLLNLLSGTDYSVQV
TAFYPGGPSEPQLINAKTLFLGVSGLSTYQVRPNSMCVQWQPLLHATSYRVSIQSVLNGQ
RQELNLGGSASRHCFYDLTPSSQYQINIYTQMQEMEGPSVSITDMTLSEPTPVPTEPPST
EPTPTIPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDGTQVA
VAQFSDDARTEFLLSSHGNKEALLEAIQKIRYKGGNTKTGRAIKHVKESIFTPEAGARRG
VPKVLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVD
DLDAVKKIEEQLITFVCEAATATCPSVLMSGNTLAGFKMMEKFGLVEKEYSTLPGVSLEP
GSFNSFPCYRLHRDALVLQPTKYLHPEGLPSDYTISMMLRLLPETPQEPFALWEILNKDN
EPMVGLILDSSGKTLTFFNHDYRGDFQTVTFEGPEIKKVFHGSFHKLHVTISKTSVKVVL
DCFVVGEKSIRAAGNITTDGVEVLGKMVRSRAKRDSSAPFQLQMFDIICSTSWASRDKCC
ELPALRVEEQCPPLPHACTCSQESKGPPGPSGPPGGPGIRGARGNRGEPGVTGPQGPMGE
IGPSGPPGPPGPQGPSGLSIQGPPGIHGEKGEKGDTGTGGPMGVPGSPGSPGRDGPPGAR
GQPGNSGPQGRQGPPGPIGAPGAPGVPGPNGPVGPPGEQGVPGLAGTKGDKGERGDVQSQ
AAVRAIARQVCEQIIQSHFSRYNSILNQIPQQLSGSVRTVTGPPGEPGRRGPPGPQGEQG
APGRPGFPGTNGQSGQPGERGLPGEKGERGSPGVGSQGPRGPPGAPGLPGEGRAGSQGPP
GQPGSPGAAGRPGNPGAAGPTGPPGYCDQNSCLGYNVGVQQDYRNDY
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggatgttgttgatgggagaggtcaggtggtgttttctggccccgctggtttta
cttgtctttgtttcctgtgaccccagtaagactcagggtcaagtaccagctccgaggagg
ctgcgtttcaaagtgcacagttcccgcaaactcctagtttcatggagggagcccagagga
gatgtcgacagctatttatttctctacaacagcttaccaggtggtcagcaaagggagatc
attgtgtctaaatctgacccaaaggttttaataacggactacaatccgtctaaggactac
attattagtgtcattgctattagaggcagagagcagagcagaccacttcgggggagattt
aaagctaaaccagctgctggaggtgaaagtgacaaagaagatgagtctgagccgcagagg
ctgactgattcagatggacctcctgacgatgccaacgagatctctggagctgatcagttt
gtgtgccacactgcggccattgcagatattgtgatcctggtagacggctcatggagtata
ggccggatcaacttcaagctggtccgtatatttttggaaaacctggtcaacgcttttgac
attggcattgataagaccaggataggcctggcccagtacagcggagatcccaggatagaa
tggcatctgaatacttactctacgaaagaagctgtcatcgatgcagtgaagaatttaccg
tataaaggaggaaacactctcacagggcttgcattgaattttgtctcagactactgtttc
aagcctgaagctggctcaagagttggtgtaccaaagatagggattctcatcacagatgga
aaatcccaggacgacgttgtacccccagcagagagcctgcgaaaggctggtgttgagctg
tttgccattggtgtaaagaatgctgatgagaacgagctgcggtccatcgcctcagagccg
catcacactcatgtctacaatgtagctgacttcaacattatgagttcgatagtcgaggga
ctgacaaagaccgtgtgtgaacaagtggagctgcaagacaaagacatcaagcagaaattt
acgccagagaaaacggaaatgccgctcaacctggaaacctcagaggtcacagctcagagc
tttcgggtctcatggagtccggcagctggaaacgtagagatgtatagagtggtttaccgt
ccggctcagggaggagaaccacaggaggctgtcgtggctggcagtgagacttcagtggtg
ttaaagcatctcagctctctcactgagtaccagctcgctgtgtttgctgtgtacacggac
gaggcaagtgaagctctgagaggatcagaaactaccttggctctcccatcagtcgccagc
ctccagctgttcgatgcgactcacagcacaatgcaggccaggtggagccgtgtggatgga
gtctcaggctacatgctgctgtatgctcctattacagatgatggagatctaaacaacgag
attaatgtagctgatggagtaacagaggtggagctggttggcttgacgcctgacacagta
tacaccgtcactgtttatgctatgtatggagaagaagccagtgaacccaaaacaaatcag
gaaacaacattacctctgagccctcccaggaatctccagttttcagacgtcactcataac
tccgcccacatcagctgggattcaccgcctgatggggtgaaaggttaccgcatcatgtgg
gtcatgacagacggactggtcacaaaggaggtgaaggtgggcccagtgaattcgtacgac
ctcagtgagctggcgtccctcatggagtactcggtggccatctttgctttgtacaatgag
ggccagtcagagccactcactgatggcttcacaaccactccggttcccggtcctctgaat
ctgcactccagtgacgtcagcactggcagctttaaagtcagctgggatcactcagccaca
gacattgctctctacagactctcctgggcaccattctctggtggtgacacaagggaggtg
tttttgattgaaagtgagaacagttacactgtcgacggtctcagtccctccactaaatac
gaagtcctgttaacggccatatttgaagatgaatctgaaagcgacacggtctctgtcata
gaaaccacattggctataacaacaacgattcataccacaaccacagtgacacgtaaggct
gtgaaaaacctttacctgagtgatgagaccacccaaagcttagaggcatcctgggagctg
gaagatactgatgtacagagctacaggatttcctacactgacctcagtgcaaaccaagag
gaggaaactatatccgttggtggtggacagaaaagtgcattgctccagcctttactacca
gacacacagtacaaagtgacggtcacaccagtgtacgttgatggacaagatggcatcagt
gcttctgctttgggttctacattgcctctcttgtctcctgaaaatctacgtgtgtcagag
gagtcgtacaaccgcttcagggtctcctgggatctgcctcagtctccgacagaaggttac
aggattgtctaccggcccattcatgttcaaagtccagttttggagacgacggtagacgaa
gatgtgaactcaattctcctcctgaatcttttaagcgggacggattacagtgtccaagtg
acggctttctacccaggaggaccaagtgaaccacagctcattaatgcgaagacattgttc
cttggtgtctctggcttgtcaacctaccaggtgcgccccaacagcatgtgtgttcagtgg
cagcctcttctgcacgccacatcataccgggtctccatacagtctgtactcaatggtcag
aggcaagaactaaacctgggaggttcagcttcgcgccactgtttctatgacctcactccc
agtagccagtaccagatcaatatttatacacagatgcaagaaatggaaggaccgtctgta
tccattactgacatgacactttcagagccgactccagttccgactgaacctcccagtaca
gagcccactcccaccatcccgcctgctaaagaagtgtgcaaggaagccaaggctgacctg
gcgtttttggttgacggctcttggtccattggagacgacaacttcatgaagatcacacgt
tttctctacagcactatgggttcgctggatctgattggaccagatggcacccaggtggct
gtcgctcagttcagcgacgacgcgcggacagaatttctgctgagttcccacggtaacaaa
gaagcgctgctggaagccattcagaagatcagatacaagggcgggaacaccaagacaggt
cgagccatcaagcatgtgaaggaatccatcttcacgccagaggctggagccaggaggggt
gttcccaaggtcctggttgttctgaccgatggacgttcgcaggatgatgtcaacaaagtg
tcaaaggaaatgcaaatggagggctacatcatctttgcaatcggctttgcggatgcagac
tatggagagctggtgaatattgccagcaagcccagcgacagacacgtctttttcgtggat
gatctggatgctgtgaagaaaatagaggagcagcttattaccttcgtctgtgaggcagcc
actgccacttgtccctctgttctgatgagcggcaacacgctggcaggtttcaaaatgatg
gagaagtttggcctggtggagaaggagtacagcaccctacctggagtttctctggagcct
ggttcgtttaacagcttcccctgctacaggttacaccgcgatgccctggtgttacagccc
accaagtaccttcaccctgaaggtttgccatctgactacaccatttctatgatgctccgt
ttgctccctgagaccccgcaggagccctttgctttgtgggaaatcctcaacaaagacaat
gagccgatggtgggcctaatcctcgacagctctgggaagactctgacattcttcaaccac
gactacagaggagacttccagactgtcacattcgaaggaccagaaatcaaaaaggttttc
cacggcagcttccacaagctccatgtaaccatcagcaagacgtcggtgaaggtggtgtta
gactgctttgtggtcggggagaagtccatcagagcggctgggaatatcaccacagacgga
gtcgaggtcctggggaagatggttcggtccagagccaaaagagacagctctgctccgttt
cagctgcagatgtttgacatcatctgcagcacgtcctgggccagcagagataagtgctgt
gagctgccagctttgagagtggaggagcagtgtcctcccctgccccatgcctgtacctgt
tctcaggagagcaaaggacctccaggaccgtctgggccccctggtggacccggaataagg
ggagccagaggaaacaggggggaaccaggagtgacgggaccacagggacctatgggggaa
atcggcccttctggacctccaggaccgcctggtcctcagggacccagtggactctcaatt
cagggacccccaggcattcatggagaaaaaggagagaaaggtgatactggcactggagga
ccaatgggcgttcctggaagccctgggtctccaggcagagatggtcctccgggagcaagg
ggtcagccgggtaacagcggacctcagggaagacaaggacctcctggacccatcggagcc
ccaggagcccctggagtcccagggcccaatggaccagtggggcctccaggtgaacaagga
gtgcctggtcttgctggtaccaaaggcgataaaggagaaagaggtgatgtgcagtcccaa
gcagcagtgagagcaattgcacggcaagtctgtgaacagattatccaaagccatttctct
cgatataattccatcttgaaccagatccctcaacagctttcaggatcggtccgaacagtg
acggggccgccgggcgagccgggcaggagaggccctcctgggccccagggagagcaaggc
gcccctggcagacccggtttccccggtactaatggtcagagcggacaaccgggtgaaaga
ggtttgccaggtgaaaagggagagagagggagtccaggcgttgggagtcagggacctcga
ggaccacccggtgcgcccggcctgccaggcgaaggccgggcaggcagccagggcccacct
ggtcagcccggaagcccgggagcggctggtaggcctggaaatccaggagctgcgggacca
accggaccaccaggatactgtgaccagaactcgtgtctgggatacaatgttggagttcaa
caggattacaggaatgattactga
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integrated database retrieval system
