Gambusia affinis (western mosquitofish): 122830866
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Entry
122830866 CDS
T07758
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122830866 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122830866 (rad54b)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122830866 (rad54b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Nodulin_C
Motif
Other DBs
NCBI-GeneID:
122830866
NCBI-ProteinID:
XP_043972537
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Position
LG05:complement(16631130..16654038)
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AA seq
936 aa
AA seq
DB search
MRRSGAPSQLLGNAVKKPRFVPPGTSASCPVEESKPLAPKLGLGNALDKVQRSLSVAVVN
KSTCSVQGQTGQTAPGLSKVLARVLTATESKENEDKTKYEDCTEDINVSAGVNGGPQWTH
ASPQTPQPPADSPHVSGAAGPDRVRYFSVVWCKASKKKHKRWEGDAVLVARGRTVVLKDM
EGKDIGKGSGYKVSELASLSEGETLMIGGKEVEVMGILSAEDFAKGRCFQEVQTDQEELH
TKAAPPPPRRFNPKPFCPPTMLGRAGHPENKLQAEQTSKPRHDPLAPGALVMPRPSSNHQ
WLHNKSGLPVVDVVVDPHLTMHLRPHQREGIVFLYECVMGMRAAGRHGAILADEMGLGKT
LQSVALCWTMLKQGPYGGKPVAKRVLVVTPGSLVQNWRAEFTKWLGRERISVFTVDQDHR
IEEFLSSPLHNVLVISYEMLLRCLEPIQKVEFGLIICDEGHRLKNSSIKTSSAVSSLSCH
RRVILTGTPVQNDLQEFYAIIEFVNPGILGSTTAYRKVYEEPILRSRQPSCSEDERVLGE
ERAAELSRLTGMFILRRTQEIINRYLPPRLDWTLFCMPSLLQQKLYKHLLCHRVFKACLQ
GFTQGSAHLACITALKKLCNHPGLLHDTVKERTERGSVESSLYEGLADLFPESYCSAGFD
AADSGKLLVLSDLLSAIRQLSPSDRVVLVSNYTQTLDLLQDLCVRSGFTFCRLDGQTPTG
QRQRLVDAFNSPYSQSFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRD
GQKKTVHIYRLLTAGTIEERIFQRQVSKQGLSGTVVDLGKAAEHTSFSTSELRDLFSLTD
TPCLTHDLLSCSCSMDGSVNDVEVEEVELVPDRPCQLGRQGDRRGAAQKHLSMSELMQWR
HFSGDTHTFSDPYLDHARSHITFAFQTTISHTPSEQ
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgctcaggagctcccagtcagcttttgggtaatgctgtgaaaaaacctcgcttt
gtgccaccaggaacatctgcttcatgtcctgtagaagaatcaaagcctctagcccctaaa
cttggcttgggaaatgctctggataaagtccagagaagtctttcagtagcggttgtgaat
aaatcaacctgcagtgttcagggtcaaacaggccagactgctccgggtttgtccaaggtg
ctggcccgtgttctcactgcaacagagagcaaagaaaatgaggacaagacaaaatatgaa
gactgtacagaggacataaatgtttctgcaggagtaaatggaggcccccagtggacccac
gcgtctcctcaaacccctcagcctcctgcagattcacctcacgtctctggagctgcaggc
ccagacagagtccgatacttcagtgtggtttggtgtaaagccagcaagaagaagcacaag
cgctgggagggagacgccgtgctggttgccagagggcgaacagtcgtactcaaagacatg
gaggggaaggatattggaaagggtagtggctacaaggtgtcagagctggcctcgctgtct
gagggagagacgctgatgattggagggaaggaggtagaggtgatgggcatcctctctgct
gaggactttgccaaaggtcgttgtttccaggaggttcaaacggatcaagaggaactgcac
accaaggctgctccacctcctcctcgccgcttcaaccccaaacctttctgccccccaacg
atgttgggcagagcaggacatccagaaaataaactacaagcggagcaaaccagcaaacct
cgtcatgacccgctagctccaggtgccttagtgatgcctcgcccctcttccaatcatcag
tggcttcataacaagtcaggccttcctgtggtcgacgtcgtcgttgacccacacctgacc
atgcacctgcgaccccaccagagggagggcatcgtcttcctctacgagtgtgttatgggc
atgagagctgcaggtcgtcacggcgccatcctggctgatgagatgggacttgggaagacg
ctgcagagcgtggcgctctgctggacgatgcttaagcagggaccttacggcgggaaacca
gtcgcaaagcgtgtccttgtggtcactcctggcagcctcgtgcagaactggagagcagag
ttcaccaagtggctcggccgggaacggatcagtgtcttcactgtggatcaggaccacagg
atagaggagtttttatcctcgcctctccacaacgttctggtgatcagctatgagatgctg
ctgcggtgcctggagccgatccagaaggtggagtttggtctcataatttgcgatgagggt
cacagactgaagaacagcagcatcaaaacgtcctccgccgtcagcagcctcagctgtcat
cgcagagtcatactcacagggaccccagtccaaaacgacctgcaggagttctacgccatc
atagagtttgtgaacccggggattcttggttcgaccactgcttatagaaaagtttatgaa
gaaccaattctacgctccagacagccatcctgctctgaggacgaaagagttttgggggaa
gagcgcgccgccgaactctctcgtctcaccggcatgttcatcctgcggcggacgcaggag
atcatcaaccgctacttgccgcctcgtctggactggaccttgttctgcatgccgtcgctg
ctgcagcagaagctgtacaaacacctcctctgccaccgcgtcttcaaagcctgcctgcag
ggcttcacacaaggcagcgcacacctggcctgcatcactgcgctgaagaagctgtgcaac
catcctggcttgctccacgacaccgtcaaggagagaacagagcgcggatctgtggagagc
tcgttgtacgagggactcgcagatctcttcccagaatcctattgttcagcaggattcgac
gccgctgactccgggaaacttttagttctgtccgacctgctgagtgccatcagacagctc
agcccttcagaccgggtggtcctggtgtcaaactacacccagactttggacttgcttcag
gacctgtgcgttcgttccggcttcacgttctgccggctcgatggtcagacgcccacgggc
cagcggcagcggctggtcgacgccttcaacagcccctactctcagagcttcctgttcctg
ctgagctccaaagccggcggcgtgggactgaatctgattggagcgtcgcacctggtgctg
tacgacattgactggaacccggccaatgacattcaggccatggctcgggtatggagagat
ggacagaaaaagacggtgcacatttaccgtctcctcactgcaggcactattgaggagcgt
atatttcagagacaggtgtccaagcaggggctgtcggggactgtggtcgacttggggaaa
gcagcagaacacacaagcttctccaccagtgagctgcgagatcttttcagcctgacggac
acgccgtgtttgacccatgacctgctgagctgcagctgcagcatggacggctcggtcaac
gatgtggaggtggaggaggtggagcttgttcctgacaggccgtgccagctcggtcgtcag
ggcgaccgcaggggggcggcgcagaagcatctcagcatgtcggagctcatgcagtggaga
cacttctccggtgacacacacaccttctctgacccttacctggatcacgcacgaagccac
atcaccttcgccttccagaccaccatctcccacacacccagcgaacagtga
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