Gambusia affinis (western mosquitofish): 122832611
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Entry
122832611 CDS
T07758
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04142
Lysosome biogenesis
gaf04144
Endocytosis
gaf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122832611
04142 Lysosome biogenesis
122832611
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
122832611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gaf04131
]
122832611
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122832611
Membrane trafficking [BR:
gaf04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
122832611
Exosome [BR:
gaf04147
]
Exosomal proteins
Proteins found in most exosomes
122832611
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
TPR_1
Ig_TRAPPC10_3rd
Motif
Other DBs
NCBI-GeneID:
122832611
NCBI-ProteinID:
XP_043975460
LinkDB
All DBs
Position
LG06:14537053..14558869
Genome browser
AA seq
1678 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICVREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPSG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKNPELWASV
LLETNNYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGMVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDDKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM
THPADAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
SKMKQLPLVKTYLRSVQNHNNKAVNEALNNLFINEEDYAALRASIDAYDNFDNISLAQSL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLAWFLN
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLEASESL
RKQEEQATESQPIVYGTPQLMLTAGPNMAVPPQQAYGYGYTGAPAYGQPPQPNFGYGM
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcctgcctatccgcttccaggagcacctgcagctccagaacttggggatc
aacccagccaacattggcttcagcactctcaccatggagtctgacaagttcatctgcgtg
agggagaaagtgggtgagcaggcccaggttgtcatcattgacatggccgatcctaacaac
cccatccgccggcccatctctgctgacagcgccatcatgaaccctgccagcaaagttatc
gcacttaaagacgctgcaaagaccctgcagatctttaacattgagatgaaaagcaagatg
aaggctcacaccatgacggacgacgtgactttctggaagtggatctctctcaacaccgtt
gccctggtcacagacaacgccgtgtaccactggagcatggaaggcgattctcaaccaatc
aaagtgtttgaccgtcactcgagcctggcaggctgccagatcatcaactaccgtactgat
gccaaacagaagtggttgctcctcattggtatctcagctcagcaaaaccgtgttgttggt
gccatgcagttgtactctgtggacaggaaggtctcccagcctattgaaggccatgctgct
ggctttgcacaatttaagatggagggcaacaccgaagaatcaactctgttctgctttgct
gtgcggggacaagcaggaggaaaacttcatattattgaagttggaaccccgccaagtgga
aaccaaccattccccaaaaaagccgtggatgttttctttcctccggaagcccagaatgac
ttccctgttgctatgcagatcagctccaaacaagatgtcgtttttctcatcacaaagtat
ggctacatccacctgtatgatctggagaccggaacttgcatctacatgaaccggatcagc
ggggagaccattttcgtcactgctccacatgagcccactgctgggatcattggagttaac
aggaaaggacaggtgctttcggtgtgtgtggaggaggaaaacataattccctacatcacc
aacgtgctccagaacccagacctggctctacgcatggctgtacgcaacaaccttgctggt
gctgaggaactattcgctcgcaagtttaacaccctgtttgctgcaggaaattactcagaa
gcagccaaggtggcggctaatgctcctaagggcatcctgcgtactccagataccattcgg
aggttccaaagtgttccagcacaaccaggccagacttctcctttgctccagtactttggc
atcctgctggaccaaggccagctcaataagtttgagtctctggagctctgcaggcctgtt
cttcagcagggccgcaagcagctactggagaaatggctgaaggaggataagctggaatgt
tctgaggagctcggagacctggtgaaatctgttgatcccactctggccctcagtgtgtat
ctcagagcaaacgtccccaataaagtcattcagtgctttgcagagactggacagtttcag
aagattgttctttatgccaagaaggtgggctacacaccagactggatcttcttgttaagg
aacgttatgcggatcagtccagagcaaggtctccagttctcccagatgctggttcaggat
gaggaacctcttgctgatattacacagattgttgacgtatttatggagtacaacctgatc
cagcagtgcacctcattcttactagatgctctaaaaaacaacagacccatggaaggacca
ctgcagacacgtttactggaaatgaacttggttcatgccccacaggtggcagacgccatc
cttggcaatcagatgttcacccactatgaccgcgcccatgtggcacagctgtgtgagaag
gctggcctcctgcagagggcgctggagcattacacagacctgtatgacataaagcgagcc
gtggtgcacacacaccttctcaacccagagtggttggtgaatttcttcggctccctctca
gtggaggactccttggagtgtctgagagccatgctgtcagccaacatccgccagaacctg
cagatctgtgtgcaggtggcttcaaagtaccatgaacagctgagtactcagtccctcact
gagctgtttgagtcattcaagagctttgaaggattgttctacttcctgggttctatcgtg
aactttagtcaagatccagaggtccacttcaaatatattcaagccgcctgcaaaaccggc
cagattaaagaggtggagagaatctgtcgagagagtaactgctacgacccggagcgggtg
aagaacttcctgaaggaggctaaacttactgaccagcttcctttaatcattgtatgtgac
cgctttgattttgtccatgacctggtcctctatctgtatcgcaacagccttcagaaatac
atcgagatctacgttcagaaggtgaacccaagtcgtctgccggtggtcatcggaggttta
ttggacgtggactgtgctgaggatgtgattaagaacctgatcatggtggttagggggcag
ttttccacagatgaacttgttgctgaagtagagaaaagaaatcgtctgaagttgctgctg
ccctggttggaggctcgtatccatgaaggctgcgaggaacctgctacccacaatgctttg
gctaagatctacatcgacagcaacaacaaccctgagcgctttctaagggagaaccctttc
tacgacagccgtgttgtgggcaaatattgcgagaaaagagacccccacctggcctgcgtg
gcttacgagagaggacagtgtgaccaggaactcattcatgtgtgcaatgaaaactcgctg
ttcaagagtctgtcccgctaccttgtacgacgcaagaaccctgagctgtgggcgagtgtc
ctcctggagaccaacaactacagaagaccccttattgaccaggtggtccagacagcattg
tcagagactcaggatccagaggaagtatccgtcacggtgaaggctttcatgacggccgac
ctccccaatgaactcattgagctgctggaaaagattgtgctggacaattctgtcttcagt
gagcacagaaacctgcaaaacctgctcattctgacggccattaaagctgaccgaactcgt
gttatggagtacattaatcgccttgacaactacgatgccccagacatagcaaatattgcc
atcagtaacgagctgtttgaggaggccttcgcaattttcaggaagtttgacgtcaacacc
tctgctgttcaggttttgattgagcacattggaaacttagacagggcttatgaatttgct
gagcgttgcaatgagcctccagtgtggagtcagctggccaaggcccaattgcagaaggga
atggtcaaggaagccatcgactcctacatcaaggctgacgacccgtctgcttacatggag
gtgggacaggctgcagcccaaagtggaaactgggaggatctggtaaagttcttgcagatg
gctcgtaaaaaggctcgggagtcgtatgttgagacggagcttatcttcgctttggccaaa
accaatcgtctggcagagctggaagagttcatcaacggtcccaacaacgctcacattcag
caagtgggcgatcgttgttatgacgacaagatgtacgaagcggccaagctgctttacaac
aacgtctccaactttggccgtctggcctccacgctggtgcatttgggagaataccaggca
gccgtagatggagcacgcaaagccaacagcacccgcacctggaaggaggtgtgttttgcc
tgtgtagatgggaaggagttccgtcttgcccagatgtgcggtctgcacatcgtcgtccat
gccgacgagctggaggaactaatcaactactaccaggaccgcggttactttgaggagctg
atcaccatgcttgaagccgctctgggtctggaacgcgcccacatgggaatgttcacagag
ctggccatcctctattccaagtttaagccacagaaaatgagggagcacctggagctcttc
tggtcccgcgtcaacattcctaaagttctcagggcagctgagcaggcccacctctgggct
gagctggtgttcctctatgacaagtatgaggaatatgacaacgccatcatcaccatgatg
acccatccagctgacgcctggaaggagggccagttcaaagacattgtcaccaaggtggcg
aatgtagagctgtactacaaagccatccagttttatctggagttcaagccgttgttactg
aacgacctgctcatcgtgctctctccccggttggaccacacccgggccgtgaacttcttc
agcaagatgaagcagctgcctctcgttaaaacgtacctgcggtcggtccagaatcacaac
aacaaggcagtaaatgaggccctcaacaacctcttcattaatgaggaagactacgcggct
ttgcgagcatccatcgacgcgtatgataacttcgacaacatctcactggctcagagcctg
gagaagcacgaactgatcgaattcaggaggattgcagcttaccttttcaagggcaacaac
cgctggaagcagagcgtcgagctctgcaagaaggacaagctctacaaggacgccatgcag
tatgcatcagaatccaaagacacggagctggccgaggagcttctggcctggttcctaaac
gaagacaaaaaggagtgtttcgccgcctgcctgttcacctgctacgacctgctgcggcca
gacgtggtgctggaaaccgcctggcgacacaacatcatggacttctccatgccatacttc
atccaggtcatgagggagtatctctctaaggtggacaaacttgaagcctctgagtctctg
aggaaacaagaggagcaggccacggaatctcaacccattgtttacggcacaccgcagctg
atgctaacagcagggcccaacatggccgtgcctcctcagcaggcgtatggctacggctac
acgggggcaccagcctacggccagccgccacagcccaactttggttacggcatgtga
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integrated database retrieval system
