Gambusia affinis (western mosquitofish): 122832688
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Entry
122832688 CDS
T07758
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03440
Homologous recombination
gaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122832688 (brip1)
03460 Fanconi anemia pathway
122832688 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122832688 (brip1)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122832688 (brip1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122832688 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
122832688 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
122832688
NCBI-ProteinID:
XP_043975626
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All DBs
Position
LG06:complement(30459118..30536863)
Genome browser
AA seq
1367 aa
AA seq
DB search
MASPVEYTIGGVKVHFPCKAYPSQLAMMNSIMRGLNYGQHCLLESPTGSGKSLALLCSAL
GWQQAQMAKVKEGGDRNQSDKHVGDCKKSEPPSPCPCVCHREAAQPAVVDLTESPCKDTA
QPSHTASEVVPLPGESQAKSPSLASRLSEKVQASLDADCNKDEDFRPDRKRIRTAEYKSH
KRQRTQQGVIFIDDEPELERETSGTQSWKTASTQQAAGLSSSCNSSDPCSHCPCASVKDN
LKNKDKDKDGSKKIPKIFFGTRTHKQITQIAHELKRTVYSGVHMTILSSRDHTCVNPDVV
PHFNRNERCKDLLEAKDGRSCRFYHGVQKMRDQHTLQWVHGLREAWDIEDLVSLGKRLRS
CSYYAARELMQDASIIFCPYNYLLDPMIRESMEIDLKGQILVLDEAHNIEDCARESASYT
VELSSLQTTKDELDGMVHSNIRRSKHESLRNFCYALINWIQESQVLLSERGFENACKVWS
GKDILTVFHSLGVTFDTFCNMKQDLASVLEKEERVGLVNGKEDMVQVPIISASTATVLKN
LFMVLDFLYRDSCRFAEDYRIALQRSYAWTNQIPPDVPDAQGFLVRPRHRHRQNTRVKTE
VLTLSFWCLNPAVAFSDLSGSVRSIVLTSGTLSPMGSFSSELGVKFTIQLEANHVINKSQ
VWVGTVGAGPQGRKLCATFQHAETFAFQDEVGDLLLHVCRVMVKGVLCFLPSYKMLDKLK
DRWVNTGLWEKLEQEKTIITEPRGGGKGDFDELLQMYYDAIKTCEGRDGALLIAVCRGKV
SEGLDFTDDNARAVVTIGIPFPNIKNLQVELKMKYNDQHCKSRGLLPGHRWYEIQAYRAL
NQALGRCIRHRNDWGALILVDDRYKNNPNKYIAGLSKWVRQLVQHHDTFSNAMQSLEAFS
EVQQNVEVAPVNSLTLNVSELHNSSPLSGSAQSFNGEPEPRRTNSCDKPSYSQQNTITQL
KTEHNNTAEPLKALQSAPAKQLSAQHSYHIFNINPTNTNLKTPIFKAKPANCSVRPGALQ
ISSPPMNLETLCTNQTDGNCLSENTEALGVSTITTPPGFKSESPVPAKSSDDEEDKSVFY
TPELFEDERNPPTENHMSSPSLDTSTERSQELTTAFGEQSVVSVIKQSTELSLGQKEGME
ALQQSEKTGEDESQSRQRGSRLHRLSRSRQRVSLSQTAVKVRRSYRQKHRRFIKASKVSK
SNTEQKTCSLGLYCSLCGKELLPDAHVQHDVCNKNHLAVLRELRCNVGEHTCCCQSVPPP
PVSDNWMLVVQSPLSLKALRSTLEPYCDQSLTSYNAIWDPEEHSVTRFFQCKSCSSQRAK
TSAPLMAAEIHYPGNDAGDQMWLAPAAVHLCSLISGKTEMEDFSSGH
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgtggagtacaccatcggcggagtgaaagtccacttcccctgcaaggcg
tatccatcccagctagccatgatgaattctatcatgcgagggttgaactacggacagcac
tgtttgttggagagccccacaggcagcggtaaaagtctggccttgctctgctctgctctg
ggctggcagcaggctcagatggctaaagtgaaagaaggaggagacagaaaccagtcagat
aaacatgtgggcgactgcaagaagtcagaacctcccagcccgtgtccctgtgtgtgccac
agagaagcagctcagcctgctgtggtggacctcactgagtcaccctgcaaagatacggcc
cagccatcgcacacagcatcagaagttgtgccactaccaggtgagtctcaagctaaaagc
ccatctttagcgtcccgtctgtcggagaaagtccaggcctctctagacgccgactgcaat
aaagatgaggacttcagaccagacaggaagcgcatccgtactgcagagtacaagagccat
aaaaggcagcgcacacaacaaggcgtcatattcattgatgatgaacctgaattggagcgt
gaaacatctggtactcagagctggaaaactgcctcaacccagcaggcagctggtttgtcc
tcatcatgcaattcctccgacccctgctcccactgtccgtgtgcatcagtcaaagacaac
ttgaagaacaaggacaaagacaaagatggcagcaaaaagattccaaagattttttttggc
acacgaacccataagcagatcactcagattgctcatgagctgaagcgcaccgtttattcc
ggagtgcacatgactatcctttccagcagagatcacacctgtgtcaacccagacgtggtg
ccgcatttcaaccgcaacgaacgctgcaaggatctgctggaggccaaagatggaaggtca
tgcaggttctaccatggtgtgcagaagatgcgggaccagcacaccctacagtgggtccat
gggctgcgtgaagcctgggacattgaagacctggtgtctctggggaaaaggctccgatcc
tgctcttactatgctgctcgggaacttatgcaggatgcctccatcatcttttgtccgtat
aactacttgctggatccaatgatcagagagagtatggagattgacctgaaggggcagatc
ttggtgctggatgaggcccataatatagaagactgtgcaagggaaagcgccagttacacc
gtagagctcagcagcctgcagacgaccaaagatgaactggatgggatggtccacagtaat
attagacgctccaagcacgagtctctcaggaacttctgctacgccctgattaactggatt
caagagagccaggtgctgctgtctgaacgagggtttgagaatgcctgcaaagtctggagt
ggaaaggatatactgaccgttttccacagcttgggtgtcacatttgacaccttctgtaac
atgaagcaagacctggcgtctgtgttggagaaggaggaacgtgtcggtttggttaacggc
aaggaggacatggtgcaggtcccaattatcagcgcatctacagcaactgtcctgaaaaac
ctctttatggtgttggattttctctacagggacagctgccggtttgctgaggactaccgc
attgcattgcagaggagctacgcctggaccaatcagatcccgcctgacgttcctgatgcc
cagggctttttggtccggcctcgccaccgacaccgtcaaaacacgcgggtcaaaacggaa
gtactcacgctgagtttctggtgtctcaaccctgctgtggctttctctgacctgagtggg
tcagtgcgcagtatagtgctgacatcaggaacactgtcacctatgggctccttctcctct
gagcttggggtaaaattcaccatccagttagaagccaaccatgtgatcaacaaatcccag
gtgtgggtgggcactgttggtgcaggaccccaaggccgaaaactctgcgccacctttcag
cacgctgaaacatttgccttccaggatgaggtgggggatttgctgctccatgtctgccgg
gtcatggtcaaaggcgtgctctgctttctgccttcctacaagatgctggacaagctgaaa
gaccgttgggtcaacactggtctgtgggagaaactggaacaagagaaaaccatcatcaca
gagccccgcggtggtgggaagggggactttgacgagctacttcagatgtactacgatgcc
ataaaaacttgtgaaggtagagatggtgcactacttattgctgtatgcaggggtaaggtc
agtgaaggcctagacttcacagatgacaatgccagagcagtagtgaccattggaattcct
tttccaaacatcaaaaaccttcaggtggaactaaagatgaagtacaatgaccagcactgc
aagtcgagaggtcttcttccaggccatcgctggtatgaaatccaggcctacagagctcta
aaccaggcactggggagatgcatccggcacagaaatgactggggtgccctgattctggtg
gatgaccgatataagaacaatcctaataaatacatcgcaggtttgtctaaatgggtccgc
cagcttgtccagcatcacgacaccttcagtaatgctatgcagtctctggaagctttctct
gaggtgcagcagaatgtggaggtggcccctgtgaacagcctgacgctcaacgtttctgaa
ttgcataacagtagtcccttgtccgggtcggctcagagttttaatggagaaccagaacct
cggcgaaccaattcatgtgacaaaccttcttattcccagcaaaacacaatcacacagctg
aaaactgaacacaataacacagcagagccactgaaggcactgcaaagtgctccagctaag
caactctcagcccagcattcgtatcacattttcaacatcaaccctacaaacaccaacctt
aagacgcccatctttaaagcaaaaccagcgaactgctccgtccggcctggggccctgcag
atctcttctccaccaatgaatctggaaacattgtgcactaaccaaacggatggaaactgt
ctcagtgaaaacactgaggctctgggggtgtccacaataaccacccctcccggctttaaa
agtgaatcaccagtacctgcaaagtcttctgatgatgaggaggacaagagtgttttctat
actccggaactttttgaggatgaaagaaacccaccgacagagaaccacatgtcctctccc
agtctcgatacttccacagagagatctcaggagttaaccactgcttttggtgaacagagt
gttgtttcagtcattaagcaaagcacagagctatcactgggccagaaagagggtatggag
gcactgcagcaaagtgagaaaacaggggaggatgagagccagagcagacagagaggaagt
agacttcacaggctgtccaggtccagacagagagtttccctcagtcagacagctgtaaaa
gtacgaagatcttataggcaaaaacacagaagatttataaaagcctctaaagtgtcaaag
agcaacacagagcagaaaacatgttctttgggactttactgttctctctgtggaaaagaa
ctacttcctgatgcacatgtccagcatgatgtgtgtaataaaaaccatctagctgttcta
agagaactcagatgtaatgttggggaacacacctgctgctgtcagagtgtacctccacca
ccagtctcagacaactggatgctggtggttcaaagccccttgtctctaaaggccttgaga
agcactctggagccctactgtgatcagagtttaacttcatacaatgccatctgggacccc
gaggagcattctgttaccagatttttccagtgtaaaagctgctcctctcagagagcaaaa
acttctgcacctttaatggccgctgagatccactaccctggaaatgatgctggagatcag
atgtggctggccccagctgcagtccacctctgctctttgatttctggaaaaactgaaatg
gaagatttttcttcggggcattga
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integrated database retrieval system
