Gambusia affinis (western mosquitofish): 122832761
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Entry
122832761 CDS
T07758
Symbol
col4a3
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04518
Integrin signaling
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122832761 (col4a3)
04518 Integrin signaling
122832761 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122832761 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122832761 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122832761 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122832761 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122832761 (col4a3)
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122832761 (col4a3)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122832761 (col4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122832761
NCBI-ProteinID:
XP_043975762
LinkDB
All DBs
Position
LG06:1478735..1508678
Genome browser
AA seq
1729 aa
AA seq
DB search
MEPVFNRQGGGEVGAQWEVWSGASLHCCWGFTFPILTGSLRGEPTQAGAPSREVRCSLPT
WMASPAAVRRRIPRLLVRLLGLGALLLLADGKLVCHCTGKSRCHCDGVKGQKGEAGYPGD
PGLPGVMGFPGREGHLGSAGEKGNPGNAGGRGIKGSRGPPGTPGFPGPPGLPGLPGHEGP
MGRPGLPGCNGTKGEAGYRGVPGPSGPPGPRGPPGPQGMKGDSVMIPFSQEIEGAAGPQG
PPGRKGQSGDGGEPGAPGRPGDHGLPGRRGPAGIEGEKGQEGSSPTSPGPQGRKGDRGPP
GIPGKQGIKLYVEAPKELKGEPGEAGQKGFPGLPGEPGSPGVKGEKGDRGEPGSLGKPGK
KGLLGELGQRGDPGDFGSIGPPGIDGAAGEKGDRGPPGPPGQTIFNHKFVKGRRGFPGPL
GPTGFPGIQGPIGFPGLKGESGEASNGPPGSPGPTGSGGPKGEPGLPGLVVTGPPGLTGV
PGPFGLQGEPGEPGIPDMKMTGQGVPGSKGFRGPPGDKGAVGQKGQKGEVCTDCDFQPGP
PGPPGPPGPPGQDRLPGAAGPPGPAGDKGFKGAAGPPGEQGSRGPVGPQGPPGPAGEPGL
TPWLGQKGAAGDRGDKGQRGDAGQPGFPGPPGPKGETGQKGNPGRVGSKGHRGAAGPLGA
RGATGPPGPPGYSHPGRSGPAGPKGANGYMGDVGAPGPKGEKGSMGNIQNIPGDPGPKGF
RGRRGETGPGGENGPAGRRGPPGPKGQKGSDGYSYKGNRGNSGSKGDKGSRGEPGFPCYG
MKGPAGPPGHPGPVGPKGHRGFGLPGEAGKPGPRGEDGCDGPPGHPGPSGRLGDPGPAGQ
DGRPGPKGHRGVDGEPGSTGPPGPRVPGPPGPPGPRGPVGPIGPTGTRGPTGLKGDPGTL
CSRVPGATGPPGPPGPDGGPGPAGEVGPKGRRGNPGEPGGPGPRGYMGVPGPMGCPGNDG
PPGTCGEPGPKGQKGRDGSVGSQGPTGEPGDKGATGPRGFPTVISTTGDPGDPGFPGPRG
PTGEKGQGGPPGNQGPKGLDGKPGGPGPPGHPGDPGRDGERGPRGGSGPPGDKGCTGRPG
DPGEKGATGANGPPGSDGGSGKPGDKGRKGEPGFGRGGKGCRGTKGIPGPPGPSGPKGSG
GPAGDVGPLGPCGPCGSVGPKGPPGSKGSPGRAGEKGLDGLPGNCGPPGPPGNPGCQGLP
GAPGPLGPKGNQGRDGIPGPNGEKGDVGSCLPGPKGPTGGRGPPGCVGDRGPPGCCGPPG
PSGPAGDPGCQGAKGPPGPPGCAGKPGGQCIDGTKGYKGFSGPQGPKGSKGPPGPPGPPG
PGSKGHKGVKGEPGPSGPPGPIGDPGPYGPPGSCGPPGCPGEKGCRGRIGPQGPTGMEGD
KGPPGNPGPGGPPGRIGNPGPKGKDLYFPVQPEPGDPGAEGVEGQVGGIGSPGFPGPRGA
DGSKGSSGAPGWTGAPGSDGLRGEDGERGRIGRKGANGERGRVGAKGLPGEPGEPGGGAP
PRRNGFLFTRHSQDSAAPACPAQSTLIFRGYSLLFINGYSRAHGQDLGTVGSCLQRFSTA
PFLVCETGEECRYAERNDFSYWLSNIRSPPNQTDPEAALESKISKCSVCESEANVIAIHS
QTSAVPPCPADWQSLWTGFSFVMETGVGAEGSGQPLVSPGSCLENFQGMPFMECSVGSGT
CKYDNSLYSYWLAALDPDNMFRRPSSWILPGNNPDNISRCRVCMKIMQM
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggagccagtctttaaccggcagggtggaggtgaggtgggggcgcagtgggaggtgtgg
agtggggcttccctccactgctgctggggtttcactttcccaatcctcacaggatctctg
agaggagaaccgacccaagccggtgctccgagccgggaggtgcgctgctctctgcccacc
tggatggcgtctccggcggctgtgaggcggaggatcccccgcctgctggtccgcctgctg
ggcctcggcgcgctgctgctgctggccgacggcaaactggtctgtcactgcaccgggaag
tcccgctgtcactgcgacggggtcaaaggtcaaaagggagaagcaggatacccaggagac
cctggacttcctggagtgatgggatttcctggaagagaaggtcacctggggtcagcagga
gaaaagggtaacccgggaaacgcaggcggtcgaggaattaagggctctcggggacctcct
ggaactccaggttttccaggacctccaggtctcccagggcttcctggacacgaagggcca
atgggtcgacccggactcccaggatgcaacgggacaaaaggggaggccggataccgaggg
gttcctggaccttcaggcccgccgggaccacgagggcccccggggccacagggcatgaag
ggagactcggtcatgatccccttcagccaggaaatcgaaggagcagcgggaccacaaggg
ccacccggcagaaagggccaaagtggagatggaggagaaccgggcgcaccgggtcggccc
ggagaccatggacttcctggaagacgaggacctgcaggaattgaaggagaaaagggtcag
gaaggttccagtccgacgagtcctggtccgcagggcaggaagggcgatcgcggcccccca
gggatccccgggaagcagggcatcaagctctacgttgaagcacccaaagagctgaagggc
gagccgggcgaagcggggcagaaaggtttccctggtcttcctggggagccagggagcccg
ggggtgaaaggagagaagggtgacagaggagaacccggctcactgggaaaaccagggaag
aagggattactgggagaactgggacagcggggcgaccccggagacttcggctccatcggc
ccgcccggcatcgacggcgccgcgggagaaaaaggcgaccgaggacctccaggtccccca
ggacagaccatctttaatcacaaatttgtgaagggccggcgaggtttccccgggcccctt
ggacccaccgggttccccgggattcaaggtccgatcgggttcccaggactgaagggcgag
tcaggtgaggcctccaacggaccgccaggttctcctggtccaactggctcaggaggtccc
aaaggggaaccaggactgccgggcctggtggttaccggaccgccaggattgaccggagtg
ccaggaccttttggacttcagggagagccaggagagcctggaataccagacatgaagatg
acaggacagggtgttcccggttctaaaggctttcggggccctccaggggacaaaggggcg
gttgggcaaaagggtcagaaaggggaggtgtgtacagactgcgattttcagcctggccct
cctggacctccgggaccaccagggccgccaggtcaggacaggttgccaggtgcagctgga
cctccaggaccagcaggtgataaaggcttcaaaggagccgcaggcccacctggagaacag
ggctccaggggccccgtgggcccccagggccccccggggcccgcaggcgagccggggtta
accccttggctggggcagaagggggcggccggggaccggggcgataaggggcagcgggga
gacgcggggcagcccggcttcccaggaccgccgggccccaaaggcgaaacgggacagaaa
ggaaacccggggcgcgtggggtcaaaaggtcaccggggcgcggcgggacccctcggggcc
agaggagcgacggggccaccgggcccaccgggttacagccatccgggtcgttcaggaccg
gcggggcccaaaggagctaacggctacatgggagatgttggagcaccgggccccaaagga
gagaaaggctctatggggaacatccagaacattccaggagatccgggaccaaaaggcttc
agaggacggcggggggaaaccggacctggcggtgagaacggacctgcgggtcgccgagga
ccgcctggtccaaaaggtcaaaagggcagtgacggttactcttacaagggtaaccggggc
aactcggggtcaaaaggagacaaggggtccagaggagagccagggttcccctgttatggc
atgaagggaccagcggggccgcccggccacccggggcccgtcggcccaaagggccacaga
gggtttgggctgccgggtgaggcgggtaaaccaggccctcggggggaggatggctgtgac
ggacctccgggccatccgggaccgtcgggacggctgggagatccgggacctgcgggacaa
gatggccgcccggggcccaaaggtcaccgaggcgttgatggggaacccggttccacgggt
ccgcctgggccccgtgtccccggacctccaggacctccaggaccgcgaggtccggtcggt
ccaattggacccacaggaacaagggggccgacgggtctgaagggagatccggggaccctc
tgctccagagtccccggggccacagggccaccggggccaccgggacccgatggaggtcca
gggccagccggggaagtgggacccaaaggccggagagggaatcctggagagcctggaggc
ccggggccgagaggctacatgggtgttccagggccgatggggtgtcctggaaacgacgga
ccgcctgggacctgcggggaaccgggacctaaaggtcagaagggtcgagatggttcagta
ggttctcagggaccaacaggagagccaggggacaaaggagcaactggacccagagggttc
ccaacagtcatcagcacaacgggggatcctggagaccctggatttccaggacccagaggt
cccactggggaaaaaggacaaggaggccccccagggaaccaagggccaaagggcctggat
ggaaaacctggaggcccggggccaccaggacatcctggagatccaggtagagacggagag
agaggtcctcgtggtggctctgggcccccaggggacaagggatgcaccggtagaccaggt
gatccaggtgaaaaaggtgcaacgggagccaacgggcccccgggttcagatggagggtcg
gggaaacccggagataagggacgtaaaggagaaccaggttttggacggggaggtaaaggc
tgtagaggaacgaaggggattcctggacctccaggaccttctggtccaaaaggatcagga
ggaccagctggagacgttggccctctggggccctgcggtccctgtggatctgtgggaccc
aaagggccgcctggatccaaaggttctcctggtagagccggtgagaaaggtttggatggc
cttcctgggaactgtggccctccagggcctcctggaaatccaggatgccaggggcttcct
ggagcgcctggtccactgggacccaaaggaaaccagggccgggacgggatccccgggcct
aatggagagaaaggagatgtgggctcatgtctacctggacctaaggggccgacaggagga
agaggtccccctggatgcgtgggggacaggggcccgccgggatgctgtgggccgcctgga
ccctctgggcctgcaggagacccgggttgccaaggcgctaagggacccccagggcctcct
ggatgtgctgggaagccagggggacagtgcattgatgggacgaagggatataaaggattt
tctggacctcaaggaccgaaaggctccaagggtccgcccggtccgcctggtccgccaggt
cctggttccaaaggccataagggcgttaaaggagaaccgggtccctctggaccaccagga
ccaatcggtgaccccggtccttatggacctcctggttcttgcgggccgcctggatgtcct
ggagagaaaggctgcagaggacggattggaccacaaggtccaactggtatggaaggggac
aaaggaccgccaggtaacccggggccaggaggaccaccaggacgaatcgggaacccggga
ccaaaagggaaggacttgtattttcctgtgcagccggaaccaggagacccaggtgcagaa
ggagttgaaggccaagtgggaggaatcggatccccgggtttccctggaccgaggggagct
gatggttcaaaaggctcatcaggagcaccaggttggacaggagcacctgggtctgacgga
ctgagaggagaggatggagagagaggacgaatcggccggaaaggtgcgaacggagagcgt
ggcagagtgggagccaagggtcttccaggtgagccaggtgagccaggcggcggcgcgcca
cccaggaggaacggcttcctgttcaccagacacagccaggacagcgccgccccggcctgc
ccggcccagtccacgctcatattcagaggatactcgctgctcttcatcaacggctacagc
cgcgctcacggacaggacctgggaacggtgggcagctgcctgcagcgtttcagcaccgct
cccttcctggtctgtgaaactggagaggaatgtcgatacgctgagagaaacgacttttcc
tactggctgtccaacatcaggagcccgccaaaccagaccgacccagaggcggcgctggag
tccaagatcagcaagtgttcggtgtgcgagtctgaagccaacgtgatcgccatccacagc
cagaccagcgccgtcccgccctgccctgcggactggcagtcgctctggaccggattctcc
tttgtgatggaaacgggcgtgggcgccgagggctcgggtcagcctctggtttctccagga
tcctgcctggaaaacttccaaggaatgccgttcatggagtgcagcgtcggctcaggaacc
tgcaagtacgacaactccctgtacagctactggctggctgctctggaccccgacaacatg
ttcaggaggcccagcagctggatccttccagggaacaacccggacaacatcagccgctgc
agggtctgcatgaagatcatgcagatgtga
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