Gambusia affinis (western mosquitofish): 122832762
Help
Entry
122832762 CDS
T07758
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04382
Cornified envelope formation
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122832762 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122832762 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122832762 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122832762 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gaf04147
]
122832762 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122832762 (col4a4)
Exosome [BR:
gaf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122832762 (col4a4)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122832762 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122832762
NCBI-ProteinID:
XP_043975763
LinkDB
All DBs
Position
LG06:complement(1444157..1478704)
Genome browser
AA seq
1662 aa
AA seq
DB search
MSAGAGSAPRLQPWIWCFLALITAPPGGQGGDLMEPCDGRDCTTCQCLPAKGARGFPGPL
GPQGPRGPPGFPGGQGLPGQKGGRGAEGPMGGYGVKGDAGPTGLHGFPGLDGVPGLPGPA
GGPGHPGLDGCNGTRGNQGLLGLPGEQGPKGEPGFTGPKGLKGEPSTNFIQNPGAPGDPG
PSGLLGLPGEDGLPGPPGPAGPTGSAGPDGSPGSPGPRGPPGQKGRLLPGPKGEKGNQGP
EGPPGPFEYIDPPEDLYIKGEKGSPGEPGLRGVQGLQSRDAPPGIKGETGIVGFPGARGD
SGRPGPSGRKGPRGMEGSQGLPGLIGQEGFKGFAGDPGPEGPPTIEDITHIGEAGDPGLP
GGRGPPGDMGPMGTLGPPGSPGSSTPGLKGFDGPKGQTGYKGERGDPGQTADEVSPGEPG
KPGQRGQRGPKGLQGLPGTVCLKGDEGGMGDPGDGGFPGPRGDDGSRGDPGECLCKTTDL
KGPPGPPGAKGRPGSTGRRGPPGPKGEMGSSGDPGAEGAQGAKGFRGPNGQKGQKGFSVG
GLKGEKGERGGVGPEGAPGTWGTVGPPGPPGPPGDPGLKGDSVPCFPGDKGFPGPQGPKG
FPGRPGPPGAGVVGAPGQRGTPGNPGPDGFRGPPGLKGDPGDGGPCFSNPGPRGPKGDGG
PPGAPGPPGAKGTAGIRGPDGPKGDQGLSYAAGPPGDRGPPGADGDPGEDGTDGYCYDGS
EGSPGPPGPPGPPGPRGDIQIGPQGPKGQPGPQGSPGRKGRLGPPGNQGAPGPQGPSGNP
GAKGHKGNAGGPGRPGPPGPIDDCKAGTPDDMGPPGPPGPRGPQGPRGPHGPQGYKGEVG
DKGHSAIGSKGKIGEPGVQGSPGTQGCKGAQGPVGDTGPMGPMGGKGLTGPQGFEGRPGF
PGNKGTPGGPGKPGERGPKGQDGGQGCAGPKGPKGHKGCAGPPGELIPRPEKGPRGPPGC
PGEVGFSGPRGNKGEAGCTGNTGNPGPDGPPGCRGPQGPRGPQGKQGPPGPPGTKGHQGY
FGFPGLKGEPGDPGCPGPPGGPGNPGCRGPKGEKGDALGGPGPPGDKGLPGDRGPDGPCG
PSGDCGPKGLCGPQGQKGCKGHKGLQGSPGEPGVAGPPGPRGCQGLRGPPGPDGMDGPPG
RDGNPGNKGAPGPSGLHGLDGLSGQKGAKGSKGVCQGNSKSEKGPPGPKGPPGPPGPTCP
PKNGPPGPKGPTGPRGPPGDIGPPGPPGGDCKNPKQGPCGDPGDRGPDGDPGCPGEMGDP
GPNTPNCGDKGDTGDPGCSGPKGRCGYQGPPGPPGNPGNQGPKGMKGDLGLLGIPGEKGA
KGHSGPPGPKGRPGWKGSDGPKGQKGRILSNDPPCSPVRGPIGPPGLLGASGHRGLKGEI
GPLGRNGMKGDPGADGAVGPQGQEGSKGRMGEPGQPGENGVLGEKGDPGPPGDPGPPGPT
GGMKPGFLLVKHSQSKNKPTCPPNMHPLWTGYSLLYLEGQEKAYSQDLGQAGSCVPVFST
LPFSVCETKKCKYASRNDKSYWLSTMKPHPNHPFRGDTIKEYISRCVVCEAPSAAVAMHD
PNSREPPSCPPNWTRLWTGYSFIMFSGGGDEGGGLSLMSPGSCLSRFKAQPFVECQGARG
TCHFFANIYSFWLTTQSGTEGMLTDSDQQRAHVAQCSVCIRM
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccggtgcaggctccgccccccggctccagccatggatctggtgtttcctggct
ctgatcacagctcctccaggaggtcaagggggcgacctgatggagccgtgtgacgggcgg
gactgcaccacctgccagtgtttacctgccaaaggagccaggggtttcccaggtcctctg
ggtccgcaggggcctcgggggcctccaggcttcccgggtggacagggacttccaggccag
aagggcggtagaggagccgagggcccgatgggaggttatggggtaaaaggagatgctggc
cccaccggtctgcacggttttccgggtttggacggagtgccgggcctccccggcccggct
ggagggcctggtcatccaggtctggacggatgcaacggaaccagaggaaaccaggggctt
ctggggcttccaggagaacagggccctaaaggagaaccgggttttactggtccgaaggga
cttaaaggagaaccatcgaccaacttcatccagaaccccggagctcctggcgaccccggg
cccagcggactgctgggtctgccgggggaagacggtctgccgggcccgcccggacccgcg
ggtccaaccggatcagctgggcccgatggctctcctggttcacccggaccccggggcccg
cctggtcaaaaaggtcgattactgccgggaccaaaaggagagaagggaaaccagggccct
gaggggcctccggggcccttcgagtacattgaccctccagaggacttgtacatcaaaggg
gagaagggatctccaggggaaccaggactgcgtggcgttcagggactccagagtcgggat
gcgccgcccgggatcaaaggagagacggggattgttggatttccaggagccagaggagat
tctggtcgacccggtccgtccggacggaaaggtccccgggggatggaggggagccagggt
ctcccaggactgatagggcaagaaggttttaagggctttgctggtgatccgggccctgaa
ggcccccctaccatcgaggatatcactcacataggtgaggctggggaccctgggctcccc
ggggggaggggccctcctggcgacatggggccaatgggaacgcttggtcccccaggatcc
ccaggatcatcaacaccaggacttaaaggttttgatggtccgaagggccaaactgggtac
aaaggggagagaggagatccgggtcagactgcagacgaagtgtcacccggagaacctgga
aaaccaggacagcgaggacagcggggcccgaagggactgcagggcctcccaggaaccgtc
tgtcttaaaggagacgaaggcggcatgggagacccaggtgatggcggctttccggggccg
agaggtgatgatggctctagaggtgatcctggtgaatgtctatgcaaaactactgacctg
aagggccctccggggcccccaggggccaaagggcgcccagggtcaacaggacggcgtgga
cccccaggccccaaaggagagatgggttcctctggagacccaggggcggagggggcccag
ggagcgaagggcttcaggggccccaacggccagaaaggacagaaaggtttcagtgtgggc
ggcttgaaaggtgagaagggagaaaggggcggagtgggccctgaaggggccccaggaacc
tgggggacagtcggacccccgggccccccaggaccacctggagatccgggacttaagggg
gacagtgtcccttgtttccctggagacaaaggtttccctggaccacagggacccaaagga
ttccccggacggccggggccccctggggccggtgtggtgggggcccctggacaacgcggg
acccctggaaacccaggacctgatgggtttcgtggaccgcctggactgaagggagatcca
ggagacggtggcccctgtttttcgaatcctggccctcgggggccaaagggagacggtgga
ccaccaggtgccccaggtcctccaggtgctaaaggcaccgctggcatccgagggccagac
gggcctaaaggggaccagggactgtcttatgctgcaggaccgcctggggaccgaggacct
ccaggtgctgatggagatcctggagaagacggaaccgacgggtattgttacgatggaagt
gaaggttctccggggccgccgggcccccctgggccccccggaccaagaggcgatattcag
attggcccccaggggcccaaaggccagcctggaccgcaggggtccccaggacgtaaagga
cgcctcgggcccccgggcaaccagggagcaccaggtccccaggggccttctggcaaccct
ggagcaaagggacacaaaggaaatgccgggggccctggccgaccaggccccccggggccc
atagacgattgtaaggcagggacgcctgatgacatgggccccccaggccctccgggacct
cgtggccctcaaggacctcgtggccctcatggccctcaaggttataaaggtgaagttggg
gataaaggtcattcagctattggttcaaaaggcaagattggagaacctggagttcagggg
tcaccagggacacaaggatgtaagggtgcccaaggccctgttggggacactggtccaatg
gggcccatgggtgggaaaggtctgactgggccccagggctttgaaggaaggccaggtttt
ccaggaaacaagggcactcctggaggcccaggcaagcccggagagcgggggcctaaagga
caagatggaggtcagggttgtgcaggcccaaagggaccaaaaggtcacaaaggttgtgcc
ggtcctccaggagaactcattcccagacctgaaaagggcccaaggggaccaccaggatgc
cccggcgaggtcggattctccggaccacgaggaaacaaaggtgaggctggatgcacaggg
aatactgggaatccgggccccgatggacccccaggttgtaggggacctcagggacccaga
gggccccagggtaagcaaggcccgcccggacctccaggaaccaaaggacatcaaggatac
tttggatttcctgggctgaaaggagaaccgggcgacccaggatgtccgggaccccctggg
ggacctggtaatccaggatgtcgtggacctaaaggtgaaaaaggagacgcccttggtggc
cctggtccacctggagataagggccttcctggggaccgaggccctgatggcccttgtggc
ccttctggagattgtgggcccaaaggcctctgtgggccacaaggacagaaaggatgcaag
ggacacaaaggactacaaggatcccctggtgaaccaggtgtggctggtcctccggggccc
agaggttgccaggggcttcgagggcctcctggtccagatggaatggacggtcccccaggg
agggatggtaacccaggaaacaaaggagctccggggccatcaggccttcatggattagac
ggactgagtggacagaaaggtgccaaggggtccaaaggtgtatgtcaaggcaacagtaaa
agtgaaaaaggccctccaggccctaaaggtcctccaggtcctccaggtcccacttgtcca
cccaagaacggcccaccaggaccgaaaggcccaacgggaccccgagggcctccaggtgat
attggaccgccaggtccacctggaggcgactgtaaaaacccaaaacaaggaccatgtggg
gatcccggtgataggggcccagatggagatccaggttgtcctggtgaaatgggagatcct
ggtccaaatacaccaaactgtggggacaaaggagacaccggtgatccagggtgctcaggg
ccaaaaggacgctgtggatatcaggggccacccggaccaccaggcaaccctggaaaccaa
gggcccaaaggtatgaaaggcgacttgggtttgctgggcatacctggagaaaagggtgca
aagggtcactcagggcccccagggcccaaaggaaggcctggatggaaaggatcagacggt
ccaaaagggcagaaaggccgaatcttatcgaatgaccctccctgctcaccggttaggggc
cctatagggccacctggccttcttggagctagcggacatcggggcctgaagggtgaaatc
ggccccttaggtaggaatgggatgaagggggatcctggggctgatggagcagtgggaccc
caggggcaagaaggttccaagggacggatgggagagccaggccagcctggagagaacgga
gttctgggagaaaaaggtgatccgggtccccccggtgacccaggtccacctgggccgacc
ggaggcatgaaaccagggttcctgttggtgaaacacagccaatcaaagaataaaccaaca
tgtccgccgaatatgcatccgctttggactggatacagcctgctgtacctggagggccag
gagaaggcgtactcccaggatctgggtcaggccggttcctgcgttcccgtgttctccacc
ttgccgttctccgtctgcgagaccaaaaagtgcaaatacgccagtcgaaacgacaaatcc
tattggctgtcgacgatgaagccgcatccaaaccatccattcagaggagataccatcaag
gagtacatcagtcgctgtgtggtgtgtgaggcgccctctgctgccgtggccatgcatgac
cccaactccagagagccaccaagctgcccccccaactggacccgcctgtggaccggatac
tccttcatcatgttttcaggtggcggtgatgaaggcggcggcctctctctcatgtcgcct
ggcagctgcctgtctcggttcaaagcccagcccttcgtggagtgccagggcgcgcgggga
acctgccacttctttgccaacatctacagcttctggctgaccacccagagcggcaccgag
ggcatgctgaccgactccgaccagcagagggcgcacgtcgcccagtgcagcgtctgcatc
cggatgtga
DBGET
integrated database retrieval system
