Gambusia affinis (western mosquitofish): 122832787
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Entry
122832787 CDS
T07758
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122832787 (ddx20)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122832787 (ddx20)
Spliceosome [BR:
gaf03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
122832787 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
122832787
NCBI-ProteinID:
XP_043975820
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Position
LG01:complement(27877965..27884322)
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AA seq
763 aa
AA seq
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MAASMRRAAHDIETRKRTEDVLLAEGIDFGSLLLSQAVLDGLSSAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFVTIALESLILENPSTQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKAHLKKCHVAVGSPGRIKQLIELGMLSTGSVRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMNEPTFVRLNPSDLGLKG
LKQYYKLLQSHPLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGMAVTYCCHGEEENKMMAIAQKCGLSLSALPSVLEPGLMDEPCDWDVCA
AAAAPDTISPLISRTVKKKRTKVRAPASDVTENKAVESSDQRPDKTQTATLMPQHEEESE
RQVTSTGAKSLQQQHHPSEVAPTRKELQDALPKIPPLSSFKTSRSKFVTLEEAELDFHTF
ITAGLGRTVEVIREFRGRESGDETGYNEHVTLQDDGAAALTQSSERLRSLSDSSSSHVGV
RPEGLHETMLAEQKTVLKHVAGSASAVPKSSAAVAYEQEACTTNTRAPSQPESNDSVRRK
QASQNTPGQNRREKSAKIKDSRKLPEKIKREPKRETDEEECMEAEEDWSSEAYWKACHEA
WSDYYSAMSAFPEQGYQSYYSVAHNWMAAYRMNAIYMQELMKH
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccatgaggagagcagctcacgacatagaaacgcgaaagaggaccgaagat
gtgcttctggcggaggggattgacttcggctctctgctgttgtctcaggccgtgctggac
ggactgtcctccgcggggtttcagaaaccgtccccgatccagctcaaggcgatcccgctg
ggccgctgcggactcgatttgattgtacaagccaagtctgggacaggaaagacatgcgtg
ttcgtcaccatcgccctagagtctcttatcttggagaatccctccactcaggttctggtt
ttggctccgacacgtgagatcgccgtgcagatccactcggtggtcatggccatcggctgc
gccatggagggcctggagtgtcatgttttcatcgggggccggcctgtgagccaagacaaa
gcccatctaaagaagtgccacgtcgccgtgggctcccctggccgcatcaagcagctgata
gagctgggcatgttgtccaccggcagtgtcaggctgtttgtcctggacgaggcagacaag
ctgctggaggagggcagcttccaggagcagatcaactggatcttctcgtccctgcctgtc
aacaagcaaatgcttgcactctctgccacctacccagaatcccttgctcaacaccttacc
cgctacatgaacgagcccacctttgttagactcaatccaagcgacttgggcctgaaaggt
ctgaagcagtattacaagctgctccagtcccatccgctgcctcacaaagtctttgaggag
aaggtgcagcacctactcgagctgttcagtaaaatcccatttaaccaagccttggtgttt
tctaacctccacaccagggctcagcacctggcagacatcctgtcctccaaaggcttacct
gcagtttgtatttcaggtggtttgagtcaggaccagaggcttgaggcgatgtccaagctg
aagcagtatcagtgcagagttctcatctccaccgacctgacttccaggggaatagatgca
gagaaagtgaacctggtgatcaacctagatgtgccacaagactgggaaacctacatgcac
cgaattggacgcgctgggcggtttggcactcaggggatggctgtgacctactgctgccac
ggggaagaggagaacaagatgatggctattgctcagaagtgtggcctcagtttgtctgct
ttaccctccgtcttggagcctggtttgatggacgagccatgcgactgggacgtgtgtgcc
gccgccgctgctccagacacaatctcgccactgatttccagaactgtaaagaaaaagcgt
acaaaggtcagagccccagcgtctgacgtcaccgagaataaagctgtagagtccagcgat
cagaggccagataaaacccaaacagcaaccctgatgccgcagcatgaagaagaaagtgaa
aggcaggtgacttctaccggggcgaagagtctgcagcagcagcatcatccttctgaagtg
gcgccaactcggaaagagctacaagacgccctgccgaagatcccgcccctcagctcattc
aagaccagccggtcaaagtttgtgacgttggaggaggccgagctggacttccacaccttc
atcactgcaggtttggggaggacagtggaggtcatcagggagttcagaggcagagaatct
ggtgacgagactggctacaatgagcatgtcacactgcaggacgacggggccgcggctttg
acccaaagcagtgaacggttacggtcactttctgattcctccagctcacatgttggtgtc
agacccgaaggcttgcatgagaccatgctagctgagcaaaagacagttttaaagcatgtg
gctggatctgcatctgccgtgcccaaatcctctgcagccgtggcctatgagcaggaagcc
tgcacaacaaacacgagagctccatctcagcctgagagcaacgactctgtaagaaggaag
caagccagtcagaacacaccagggcagaatcgcagggagaagtccgcaaaaataaaagac
agcagaaagttgccggagaagattaaaagagagccgaagagggagactgatgaagaggag
tgcatggaggccgaggaggactggagctctgaggcgtactggaaagcctgccatgaagcc
tggagcgactactactctgctatgtcggcttttccagaacagggctaccagagctactac
agcgtagctcacaactggatggccgcgtatcgcatgaatgcaatctacatgcaggaactc
atgaaacactga
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