Gambusia affinis (western mosquitofish): 122832820
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Entry
122832820 CDS
T07758
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04136
Autophagy - other
gaf04140
Autophagy - animal
gaf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122832820 (atg16l1)
04136 Autophagy - other
122832820 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
122832820 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gaf04131
]
122832820 (atg16l1)
03029 Mitochondrial biogenesis [BR:
gaf03029
]
122832820 (atg16l1)
Membrane trafficking [BR:
gaf04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
122832820 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
122832820 (atg16l1)
Mitochondrial biogenesis [BR:
gaf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
122832820 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
eIF2A
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF12
HALZ
NET2A
Phage_GPO
Motif
Other DBs
NCBI-GeneID:
122832820
NCBI-ProteinID:
XP_043975870
LinkDB
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Position
LG06:complement(1990814..2001221)
Genome browser
AA seq
605 aa
AA seq
DB search
MAERLADCGWKRHISDQLKLRDRVQRQTFEEIVQQYNRLLEKSDLQAVLTERYQTDKYDV
QRGHEASSLDSSRSDSLHQEMSQMRIRHQEELTELHKKRGELAQTVIELNNQIQQKDREI
QSNEARMLEYQQQIASLEGDCRDLRSSLQELEMANQTLKDEYDALQITFSALEEKLRKTS
EDNQELVSRWMAEKALEANRLNAENEKDTRRRQAKLQKDLAEAAKEPLPIEQDDDIEVLA
EDGGKGAGETSPNRPIGRTLSRKTSQQPQAGLLDSISNIFGRRRSANSFGTSPETAETPS
GGCAEVRVPTTALHVFEAHDGEVNTVRFSPSSRLLATGGMDRRVKLWEVVSGRCEAKGAL
TGSNAGITSIDFDSSGSYLLGASNDFASRIWTMDDYRLRHTLTGHSGKVLSARFLLDNAR
IVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAESIV
QEMELQGRVTSLDLNHDRSELLTCSRDDVLKIIDLRSNAVRQTFSAQGFKCGADWTRVTF
SPDGNFVAGGSADGALYIWNVLTGKLDRTLDRNHSSAINCVSWSPSGTFVASVEKGSRAI
LWSDM
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggctggccgactgcggctggaagagacacatctcagaccagctgaagctc
agggacagagttcagagacaaaccttcgaggagatcgtccagcagtacaatcgtctcttg
gagaagtctgacctgcaggccgtcctcactgagagataccagacagataagtatgacgtc
cagagaggacatgaggccagctccctcgactcgtcccgcagcgactccctgcaccaggaa
atgtcccagatgagaattcgccaccaggaggagctgaccgagctgcacaagaaacgaggc
gagctggctcagactgtgatcgaactcaacaaccaaatccagcagaaggatcgagagatc
cagagcaacgaggccaggatgttggaataccagcagcagatcgccagcctggagggagac
tgtcgggatctgaggagcagcctgcaggagctggaaatggccaatcagacgctgaaggac
gagtacgacgcgctgcagatcaccttctctgccctggaggagaagctgaggaagacatca
gaggacaaccaggagctggtgtcccgctggatggccgagaaggccctggaggccaaccgg
ctcaacgcagagaacgagaaggacaccaggcgcagacaggccaaactgcagaaggacctg
gcggaggctgccaaggagccgctgcccatcgaacaggacgatgacatcgaggttctggct
gaggacggagggaagggagccggagaaacgtcaccaaaccgaccaatcggcaggacgctg
agcaggaaaacgtcccagcagcctcaggccgggctcctcgactccatctccaacatcttt
ggcaggcgtcggtcggcgaactccttcggcacgtctccagaaaccgccgagacgccgtcg
ggaggctgtgcggaggtccgggtgccgaccacggcgctgcacgtctttgaagctcacgac
ggagaggtgaacaccgtccggttcagccccagctcccgtctcctagcaaccggggggatg
gaccgcagggtgaagctgtgggaggtggtctcaggtcgctgtgaggctaaaggagctctg
accggcagcaacgcaggaatcaccagcatcgacttcgacagctctggctcctacctgctc
ggtgcgtccaacgacttcgccagtcgaatctggactatggacgactacagactgaggcac
accttgacgggtcacagcgggaaggttctgtctgctcgattcctattggacaacgcccgc
atcgtgtctggcagctacgaccgaacgctcaaactgtgggacctgcgcagcaaagtctgt
atgaagacggttttcgccggctccagctgtaacgacatcgtttgcacggagcagtgcgtc
atgagcggacacttcgataagaaggtccggttctgggacatcagggcggagagcatcgtg
caggagatggagctgcagggccgggtgacgtctctggacctgaaccacgaccgcagcgag
ctgctgacctgctccagagacgacgtgctgaagatcatcgacctgcgcagcaacgccgtc
cggcagaccttcagtgctcaggggttcaaatgtggagccgactggaccagagtcaccttc
agtcctgacggcaactttgtggccggcgggtcagcagacggcgctctctacatctggaac
gtcctgacggggaaactggaccgaactctggaccgaaaccacagctcggccatcaactgt
gtgtcctggtcgccgtcgggaacgttcgtcgccagcgtggagaaaggcagcagagccatc
ctgtggtctgacatgtga
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