Gambusia affinis (western mosquitofish): 122833089
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Entry
122833089 CDS
T07758
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03030
DNA replication
gaf03420
Nucleotide excision repair
gaf03430
Mismatch repair
gaf03440
Homologous recombination
gaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122833089 (rpa1)
03420 Nucleotide excision repair
122833089 (rpa1)
03430 Mismatch repair
122833089 (rpa1)
03440 Homologous recombination
122833089 (rpa1)
03460 Fanconi anemia pathway
122833089 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122833089 (rpa1)
03032 DNA replication proteins [BR:
gaf03032
]
122833089 (rpa1)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122833089 (rpa1)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122833089 (rpa1)
DNA replication proteins [BR:
gaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122833089 (rpa1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122833089 (rpa1)
MMR (mismatch excision repair)
122833089 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
122833089 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
122833089
NCBI-ProteinID:
XP_043976325
LinkDB
All DBs
Position
LG06:complement(26917166..26943955)
Genome browser
AA seq
600 aa
AA seq
DB search
MESLSTGAIEALANGSGWNEAVLQLVNIRKIDGGTGPSRFRVMMSDGRHTLSSFMLSTQL
NYMAEENLLVPNCVCVLKRQVTNMLKDGRRVVIILEIDVIKPADASGKIGDPVPYSDGQS
KGLQPAPVPESRPPLQPQNRNEGVDRNLKRNFVKKIPSTLPDTPGGSSKIVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNARGEGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYVSRGSLKIANKQYTTVKNDYEMTLNGESTVIPCEDSCDVPMMQCDFVSIGDLENREKD
AIVDVIGVCKSVDELTRLTTKANREVSKRALSLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTEVRGAGG
RLTENWKSLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKVLDQQNG
MFRCEKCDKEFPNFKYRLILSANIADHADNQWVTCFQDSAEAILGQNAAYLGQLKDSNES
AFDEIFQQANFNTFIFRNRVKLETYNDESRIKATVMDVKPVDHREYSKRLIMNIRSMGAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtctttcaacgggcgcgatagaggctttagcaaatggcagcggttggaacgaa
gcagtgcttcagttggtgaacattcgcaagatcgatggcgggactgggccctctcgcttc
agggtgatgatgagcgatggacgacacacactgtcatcctttatgctctccactcagcta
aactacatggcagaggaaaaccttctggtcccaaactgcgtgtgcgtcctgaagcggcag
gtcaccaatatgctcaaagatggacgacgagtggtaatcattttagaaattgatgtcatc
aaacctgcagacgcttctggtaaaataggagacccagttccttactctgatggccagagc
aaaggcctgcagccagctccagtccctgagagcagaccgcctctgcagccacaaaacaga
aatgaaggtgtggacagaaatttgaagagaaactttgtaaagaagattccttccactttg
cctgatactccaggaggaagctccaaaattgtccccatcgccagcctcaacccctaccag
tccaagtggacaatccgggctcgtgtgaccaataagagctccattcgtacgtggagcaat
gctcgaggcgaaggaaaactcttctctatggagatcgtagatgaaagtggggagatccgt
gtgaccggcttcaaccaagaagtcgacaaattcttctctctcatcgaggtcggcaaggtc
tactacgtctccaggggctctctgaagatcgcaaacaagcagtacacgacggtgaagaac
gactacgaaatgactctcaacggagagtccaccgtcattccctgtgaggacagctgcgac
gttcccatgatgcagtgcgactttgtctccatcggcgacttggagaacagagagaaagac
gctatcgttgatgtaatcggagtgtgcaagagcgtggatgagctgacccgcctgacgacc
aaggccaatcgcgaagtgtccaagagggcgctgagtttgatggacatgtccgggaagttg
gtgaccgtcaccctgtggggagaggaagcggagaagttcgacggctccggacagccgatc
gtagccataaagggcgccaagctctctgacttcggaggccgctcgctttccgcgtccttc
agcagcaccatgatgatcaacccagacatcccagaggcatacaagctcagaggctggttt
gacaaagaaggacacgccatggagggacagtccctgacggaagtgagaggtgccggcgga
agactcacggagaactggaagtccttggctgacgtgaagtcggagcatctgggacacggt
gacaaggctgactactactcctgcatagccaccatcgtgtttctgcgtaaggagaactgc
ctttatcaggcctgcccaagccaggactgcaacaaaaaagtgctggaccagcagaatggc
atgttccgctgcgagaagtgcgataaagagtttcccaacttcaagtaccgcctcattctg
tctgccaacattgcggaccacgccgacaaccagtgggtgacttgcttccaggacagcgct
gaggccatcctgggccagaacgccgcctacctgggccagctcaaggactcgaacgaatcg
gcattcgacgagatcttccagcaggcgaacttcaatactttcatctttcgcaacagagtg
aagctggaaacgtataacgacgagtcgagaattaaagcgacagtgatggacgtgaagcct
gtcgaccacagagagtacagcaagaggctgatcatgaacatacggagtatgggagccaag
tag
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integrated database retrieval system
