KEGG   Gambusia affinis (western mosquitofish): 122833145
Entry
122833145         CDS       T07758                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
gaf  Gambusia affinis (western mosquitofish)
Pathway
gaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122833145 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gaf03019]
    122833145 (exosc5)
Messenger RNA biogenesis [BR:gaf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     122833145 (exosc5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 122833145
NCBI-ProteinID: XP_043976427
LinkDB
Position
LG06:complement(4670531..4673637)
AA seq 236 aa
MTSFSCDKHRLHREGGMMEVSPSSSVSLREFGCEQTLLSRPDGSASFVQGDTSVMAGVYG
PAEVKISKEIYDRATLEVLVHPKVGLPGVRERSQEQCVRETCEASLLLSLHPRSSLTLVL
QVLHDDGALLSCCLNAACMALMDAGLSMSCLFCGVTCAISADGEIITDPTAAQEKESRAL
MTFAIDSKERRVMMSSTKGSFSVHELQQCVAVSQKASEKIFQFYRESVRRRYSKNL
NT seq 711 nt   +upstreamnt  +downstreamnt
atgacgtcatttagctgcgacaaacatcgtctccaccgggaaggcggcatgatggaagtc
tctccttcttcaagtgtttctctcagagagttcgggtgtgaacaaaccttactgtcccgt
cctgatggatcggcttccttcgttcagggagacaccagtgtgatggcgggagtctacgga
cctgctgaggtcaaaatcagcaaggaaatctacgaccgggcaaccctggaggttctggtt
catcccaaagtgggactgccgggtgtgagggagcgatcacaggaacaatgtgtgcgggaa
acgtgtgaggcgtctctacttttatctctccatcctcgctcgtcgctcacgctcgtcctg
caggtgctgcacgacgacggcgctctcctgtcctgctgtctgaacgcagcctgcatggct
ctgatggatgccggcttgtctatgagttgcctgttttgtggcgtgacctgtgccatcagc
gcagacggtgaaatcatcacagacccgactgcagctcaggagaaggaaagtcgagctttg
atgactttcgccatcgacagcaaagagcgcagagtgatgatgtcatcaaccaaaggctcg
ttctcagttcatgagctgcagcagtgcgtagccgtcagtcagaaagcgtcagagaagatc
ttccagttctacagagaatccgtcagacgccgatactccaagaacctttga

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