Gambusia affinis (western mosquitofish): 122833162
Help
Entry
122833162 CDS
T07758
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122833162 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122833162 (prpf8)
Spliceosome [BR:
gaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122833162 (prpf8)
Complex C
U5 SnRNP specific factors
122833162 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
122833162
NCBI-ProteinID:
XP_043976450
LinkDB
All DBs
Position
LG06:complement(19514048..19530070)
Genome browser
AA seq
2359 aa
AA seq
DB search
MAAAFPYRGVPPGMPTGVPPGVPPVVPPGVPPGVPPPVVPPPAPIPDYMSEEKLQEKARK
WQQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMP
HAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKR
DRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDTEEDSSVVEWFYEHQPLKDN
PKFVNGTTYRRWQFTLPMMSTLYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGG
PKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPN
VVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTD
NTANGIALLWAPRPFNLRSGRTRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVL
NALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYL
HLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSD
GLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLVYYRFNTGPVGKGPGCGFWSAGWRV
WLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDM
MPEGIKQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHY
NRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHW
LESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHE
ALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLF
PPWIKPADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRL
LRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLH
RASEMAGPPQMPNDFLSFQDTTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTE
HPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVS
VYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDES
MQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQ
TRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSG
MSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGI
PRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQ
ALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTL
WWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQV
FDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTT
TQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYG
NWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQI
IWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQL
AKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQAC
LKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKP
DKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEI
SAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVR
AISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDN
PQVKEIRCIVMVPQWGTHQTVHLPNQLPSHEYLKEMEPLGWIHTQPNESPQLSPQDVTTH
AKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHY
ERVQMLLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLN
FASLQEGEIYNADREDMFG
NT seq
7080 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcctttccctacagaggagtccctccagggatgccaacaggtgtgcctcca
ggagtacctccggttgtcccccctggtgttccaccaggcgtaccacctcctgttgttccc
cctccagcacctattccagattacatgtctgaggaaaaactccaggaaaaagcaaggaaa
tggcagcagctgcaggccaagcgctatgcagagaaaaggaagtttggctttgtggatgcc
cagaaggaagacatgcctcctgagcacgttcgcaagatcataagggaccatggagacatg
accaatagaaagtttcgccatgacaaaagagtctacctaggcgctctgaagtacatgcct
cacgcagtgctgaagcttctggaaaacatgccgatgccctgggagcagatcagagatgtc
cctgtgctctaccacatcaccggagccatttcctttgtgaatgaaatcccttgggtcata
gagcctgtctacattgcccagtggggcaccatgtggatcatgatgcgtcgtgagaagcgt
gaccgacggcacttcaagaggatgcgctttccgccgtttgacgatgaagagccaccgctg
gactacgcagacaacatcctggatgtggaacctctggaggccattcagatggagctcgat
actgaggaagattcttcagtcgtggagtggttctatgagcaccagcccctcaaagataat
cccaagtttgtgaatggcaccacctaccgtcgctggcagttcactctccccatgatgtcg
acgctgtatcgcctggccaatcagcttctaacagatttagtggactttaattacttttat
ctgtttgacctgaaggccttcttcacttcaaaagctttgaacatggccatcccaggagga
ccgaagtttgagccacttgtcagagacattaatcttcaggatgaagactggaacgagttc
aacgacatcaacaagatcatcatccggcagcccatcaggaccgagtacaagattgctttc
ccctatttgtacaataacctgccgcaccatgtgcaccttacctggtaccacacacccaat
gtggtatttatcaagactgaggacccagatcttccagcgttctactttgatccattgata
aaccccatttctcacagacattctgtcaagagccaggagcctctccctgatgatgatgag
gagtttgagcttccagagtttgtggagccgttccttaaagagacgccgctctacactgac
aacacagccaatggcatcgctctcctttgggcccccagacctttcaacctgcgttctggc
cgcacaaggcgcgccatcgatatccccctggtcaaaaactggtaccgagagcactgcccc
gcaggacagccggtgaaagtacgtgtgtcgtaccagaaactgctgaagtactacgtgctc
aacgctctcaaacaccgaccccccaaggctcagaagaagaggtacctgttccgctccttt
aaggcaacaaagttcttccagtccaccaagctggactgggtggaggtggggctgcaggtc
tgcaggcagggttacaacatgctcaatctgctcattcatcgcaagaacctcaactacctg
catctggactacaacttcaatctgaagccggtcaagacgctcaccacaaaggagagaaag
aagtccaggttcggcaacgccttccatctgtgcagagaggtgctacgtctgagcaagctg
gtggtggacagccatgtgcagtacagactgggaaatgttgatgcctttcagctgtctgac
ggtctgcagtacatctttgcacacgtgggacagctgacgggcatgtaccgctacaagtac
aagctgatgagacaaatccgcatgtgcaaagacctgaagcatctcgtctactaccgcttt
aacactggtcctgtgggcaaagggccaggctgtggcttctggtctgctggctggagagtg
tggctcttcttcatgcgggggatcactccgctgctggagaggtggctcgggaacctgctg
gccaggcagttcgaaggacgtcattccaagggcgtggccaagactgtgaccaaacagcgc
gtggagtcgcactttgacctggagctgcgtgctgcagtgatgcacgacatcctggatatg
atgcctgaaggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcc
tggaggtgctggaaggccaacatcccatggaaggtgcctggtctcccgactcccattgag
aacatgatcctgcgatacgtgaaggccaaagctgactggtggaccaacacggctcactac
aacagagagcgaattcgccgcggagccactgtggacaaaacggtgtgcaagaagaacctg
ggccggctgacccgtctgtacctgaaggccgagcaagagagacagcacaactatctgaag
gatggaccttacatcactgcagaagaggctgtggccatttacacaaccactgtgcactgg
ctggagagtcggcgcttctctcccatacctttccccccactttcctacaaacacgacacc
aagctgctgatcctggctctggagaggctcaaagaggcatacagtgtgaaatctcgtctg
aatcagagtcagagggaggagctggggctgatagagcaggcttacgacaacccgcatgag
gcgctttccaggatcaaacgtcacctgctcacacagagagctttcaaagaggtcggtatt
gagttcatggacttgtacagccacctcgtgcctgtgtacgacgtggagcccttggagaag
atcacagatgcgtacctggaccagtacctgtggtatgaggccgacaagaggcgacttttc
cctccctggatcaaaccagctgacactgaacctccaccgcttctggtctacaagtggtgc
caaggcatcaacaacttgcaggacgtgtgggaaacagctgagggcgagtgcaacgtgatg
ctggagtctcgctacgagaaaatgtacgagaagatcgatctgactttgctcaacaggctg
ctgcgtcttatcgttgaccacaacattgctgattacatgacggccaagaacaacgtggtg
ataaactacaaggacatgaaccacaccaactcttacggcatcatcaggggactccagttt
gcctcgttcattgttcagtactacggtcttgtgatggacctgctggtgctcggtttgcac
cgtgccagcgagatggccggcccaccccagatgcccaacgacttcctgagtttccaggac
accaccaccgaatcagcccatcccatcaggctgtattgtcgctacatcgaccgcattcac
atcttcttcagattttctgctgacgaggccagagacctgattcagcggtacctgacggag
cacccggaccccaacaacgagaacatcgtgggatacaacaacaagaagtgctggcctcgt
gacgcccgcatgagactaatgaagcacgacgttaacctcgggcgagcagtcttctgggac
atcaagaaccgcctgccgaggtctgtgaccacagtccagtgggagaacagctttgtgtcg
gtctacagcaaagacaaccccaacctgttattcaacatgtgtggcttcgagtgccgcatc
cttccgaagtgccgcaccagctatgaggagttcactcacaaagatggcgtctggaacctg
cagaatgaggtcactaaagaaaggacggctcagtgtttcctgcgtgtggatgatgaatcc
atgcagcgcttccacaacagagtgcgtcagattctcatggcttctggatccaccactttc
accaagatcgtgaacaaatggaacactgctctgatcggcctgatgacctacttccgtgag
gcagtggtgaacacacaggagctgctggaccttctagtgaaatgcgagaacaagatccag
acccgtatcaagattgggctgaactctaagatgcctagccgtttccctccggttgtcttc
tacactcctaaagagctgggcggtcttggcatgttgtccatgggtcacgttctcatccca
cagtcagacctgcggtggtccaagcagacagacgtggggatcacccacttcaggtctgga
atgagtcatgaagaagatcagctcattcctaacttgtaccgctacattcagccatgggag
agcgagttcatcgactcccagagagtctgggccgagtacgccctcaagaggcaggaggcc
attgcccaaaacaggcgtctcactctggaggatttggaggattcgtgggacagaggaata
cctcggatcaacacacttttccagaaggacagacacactctggcctatgacaaaggctgg
agagtcaggacagacttcaaacagtatcaggtgctgaagcagaatcccttctggtggacc
caccagaggcacgacggtaagctgtggaacctgaacaactaccgcactgacatgatccag
gctctgggtggcgtggagggcatcctggagcacacactcttcaaaggcacttacttcccc
acctgggagggtctcttctgggaaaaagccagcggctttgaagagtcaatgaaatggaag
aagctgacgaacgcccagaggtctggtctgaatcaaatcccgaatcgtcgcttcactctg
tggtggtcccccaccatcaacagagccaacgtgtacgtgggtttccaagtacagcttgac
ttgacgggaatctttatgcacggcaagatccccacgctgaagatctccctcattcagatc
ttcagggctcacttgtggcagaagattcacgagagcatcgtcatggatctctgtcaggtt
tttgaccaggagcttgacgctctggagatcgaaactgtgcagaaggagaccattcatccc
aggaagtcctacaagatgaattcgtcctgtgcagacatcctcctgtttgcgtcttacaag
tggaacgtgtcccgcccgtctctgctcgctgactccaaggatgtgatggacagcaccacc
acacagaagtactggattgacatccagctcagatggggcgactacgactctcacgacatt
gagcgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccc
tcccccactggagtgctcattgccattgacctggcttacaacctgcacagtgcctacggt
aactggttccctggtagcaagcctctgatccagcaggccatggccaagatcatgaaggcc
aacccggctctgtatgtgctcagagagcgcatccgcaagggtctgcagctgtactcctca
gagcccactgaaccgtacctgtcctctcagaactacggagaactcttctccaaccagatc
atctggtttgtggacgacacgaacgtgtacagagtcaccatccacaagacttttgaagga
aacttgaccacaaagcccatcaatggagccattttcatcttcaaccccaggacaggccaa
ctgttcctcaagatcatccacacatctgtgtgggctggacagaaacgtctgggacagctg
gccaaatggaaaacggctgaagaagttgctgccctgatccgctctctccctgtggaggag
cagccaaaacagatcattgtgactaggaagggcatgttggaccctctggaggtccacttg
ctcgacttccccaacatcgtgatcaagggctcagagttacagctgcccttccaggcttgt
ctgaaggtggaaaagtttggagacctgatcctgaaggccacagagccacagatggtgctg
ttcaacctctacgatgattggctgaagaccatctcgtcttacactgccttctcccgtctc
atcctgatcctaagagcgctccacgtcaacaacgaccgcgccaaggtgatcctgaaacct
gataaaaccacaatcactgagccccatcacatctggcccacgctcacggatgaggagtgg
atcaaggtggaagttcaacttaaagatctcattctggccgattatggcaaaaagaacaac
gtgaacgtcgcctcccttactcagtctgagatccgtgacatcatcctgggtatggagatc
tcagccccgtctcagcagcgtcagcagatcgccgagatcgaaaaacagaccaaagagcag
tcgcagctcaccgccacacagacccgcaccgtcaacaaacatggagatgagatcatcacc
tccaccacctctaactacgagacgcagaccttctcttccaagacggagtggagagtcagg
gccatatctgctgccaacctccatctccgaaccaaccacatctatgtgtcctctgatgac
atcaaggagacgggttacacctacatcctgcccaagaacgttctcaagaagttcatctgc
atttcagatctgcgggctcagattgcaggctacctgtatggcaccagcccaccagacaac
ccccaggtgaaggagatccgttgcatcgtcatggtacctcagtgggggacacaccagact
gtccacctccccaaccagctgccgtctcatgaatatcttaaagaaatggagcctcttggc
tggatccacacacagccgaacgagtcccctcagctgtccccacaggacgttacaacccac
gctaagatcatggctgataacccgtcatgggatggagaaaagaccatcataatcacttgc
agcttcacgcctggttcgtgcacactcacagcctacaagctgacccccagcggctacgag
tggggtcggcagaacacagataaaggcaacaacccgaaaggctaccttccatcccactat
gaaagagtccaaatgctgctctctgatcgcttcctgggctttttcatggttcccggccaa
gtctcctggaactacaacttcatgggtgtgcgccacgatcccaacatgaagtacgacctg
cagttgtccaaccccaaagagttctaccatgaagtacatcggccttcgcacttcctaaac
ttcgcctcgctgcaggagggcgagatttacaacgctgacagagaggacatgttcggctga
DBGET
integrated database retrieval system
