Gambusia affinis (western mosquitofish): 122833290
Help
Entry
122833290 CDS
T07758
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122833290 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122833290 (supt5h)
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122833290 (supt5h)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122833290 (supt5h)
RNA polymerase I system
122833290 (supt5h)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122833290 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
122833290
NCBI-ProteinID:
XP_043976694
LinkDB
All DBs
Position
LG06:complement(1034857..1050098)
Genome browser
AA seq
1084 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVDENEEEAASPVGSDKVADEEGEDLDDDDEEYDEEE
DEEDDDRPRKKPKHGGFILDEADVDDEDEDEDRWSEGGEDILEKEEAEASNLDHVVLDED
HSGSRRLQNLWRDSREEALGEYYMRKYAKSSVGEHYAGGPEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVKAA
IEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKAKMSLKDWYAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDF
MIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITILPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHHGGGGAQQRGGGGGGGGGFGRGRGRRDNDLIGQTVRISQGPYKGY
IGVVKDATESTARVELHSTCQTISVDRQRLTAMGAKRHTGSTSAHGRTPMFGSQTPMYGA
GSRTPIYGSQTPMQDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFGF
DDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNPEQYSPYAAPSPQG
SYQPSPSPQSYHQVAPSPVGFQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
GGYNPHTPGSNIEQGSGDWVTTDILVRVKDSFMDLMGQVGVIRSVTGGMCSVFMQDSEKV
VSVSSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLG
RLEH
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagcgaggacagcgacttttctgacaaccagagcgagcggagcagcgatggg
gaggccgaggaggtggatgagaatgaggaggaggcagccagccctgttggcagcgataaa
gtagctgatgaggagggggaggacctggatgatgatgatgaggagtatgatgaagaggag
gacgaggaagacgacgaccggccgagaaagaagccgaaacacggagggttcattctggac
gaagccgatgtggacgatgaagatgaggatgaggatcggtggtcggaaggaggagaggac
attctggagaaagaagaggctgaagcttccaacctggaccacgtggttctggatgaagac
cactctggatccaggcggctgcagaacctctggagggactccagggaggaggcgctgggc
gaatactacatgaggaaatacgcaaagtcctccgtgggagagcattacgctggaggtcca
gaggagctttctgatgacatcacccagcagcagctacttcctggagtcaaggacccaaac
ctgtggaccgtgaaatgtaagatcggcgaggagagggcgaccgccatcgctctgatgagg
aagttcatcgcctaccagttcactgacacgcctctccagatcaagtcggtggtggcgcct
gaccacgtcaaaggctacatctacgtggagtcgtacaagcagacgcacgtgaaggccgcc
atcgaaggcatcggcaacctgcgcatgggcctgtggaaccagcagatggttcccatcaag
gagatgaccgacgtcctgaaggtcgtcaaggaggtcaccaacctgaagcccaagagctgg
gtccggctcaagagaggcctgtacaaggacgacatcgcccaggtggactacgtggagccc
agtcagaacacaatctccctgaagatgattccccgcatcgacctggaccggatcaaggcc
aagatgagtctgaaggactggtacgccaagaggaagaagttcaagaggcctgcgcagcgc
ctgtttgatgccgagaagatcaggtctctggggggggaagtcagccatgatggagacttc
atgatctttgaggggaaccgttacagtcgcaaaggcttcctgttcaaaagcttcgccatg
tccgccgtgatcacagacggagtgaagcccacgctgtcggagctggaaaagtttgaagac
cagccagaggggatcgacctggaagtggtcactgagtcgggtaaggagcgtgaacacaac
ctgcaggccggggacaacgtggaggtgtgtgagggagagttgatcaacctgcaggggaag
atcctgagcgtcgacggcaacaagatcaccatcttgcccaaacacgaagacctgaaggac
ccgctggagttcccggcccacgagctcaggaagtacttccggatgggcgaccacgtgaag
gtcatcgccgggcgctacgagggcgacaccggcctcatcgtcagagtggaggagaacttc
gtcatcctcttctcggacctcaccatgcacgagctcaaggtgctgcccagagacctgcag
ctttgctcggagacggcatcgggcgtggacgtcggggggcagcatgaatggggcgagctg
gtgcagctggacccgcagacggtgggcgtcatcgtccggctggagagggagacgttccag
gttctgaacatgcacgggaaggttctgacggtgcgccaccaggcggtgaaccgcaggaag
gacaaccgcttcgccgtggcgctggactccgagcagaacaacatccacgtcaaggacatc
gtgaaggtcatcgacgggccacactcgggtcgtgaaggggagatccgccatttgttccgc
ggcttcgccttcctgcactgcaagaagctggtggagaacggagggatgttcgtctgtaag
accagacacctggttctggccggaggctccaagccgagagacgtgaccaacttcacggtg
ggggggttcgccccgatgagcccccggatcagcagccccatgcaccatggcggcggaggc
gctcagcagagggggggcggcggcggtggcggtggaggatttgggcgtggccggggacgc
agggacaacgacctgattggtcagacggtgcggatctcccagggtccttacaaaggttac
atcggtgtggtgaaggacgcgacggagtccacggcccgcgtggagctgcactccacctgc
cagaccatctctgtggaccgccagaggctgaccgccatgggagcgaagaggcacaccggg
tcgacctcggcccacggacgcacccccatgttcggctcccagacccccatgtacggcgcc
ggctccaggacgcccatctatggctcccagacgcccatgcaagacggaagccgaacgcct
cactacggctcccagaccccgctgcatgatgggagcaggactcctggtcagagcggcgcc
tgggaccccagcaaccccaacacaccttccaggaacgatgaagagtacgacttcggcttc
gacgacgagccgtcgccgtcgccgcagggctacggtgggacccccaacccccagacgccg
ggctacccagaggtcccctcccctcaggttaacccccagtacaacccccagaccccggga
acgccagccatgtacaacccggagcagtactcgccgtacgctgcgccgtcgccacagggc
tcctaccagcccagccccagtccccagagctaccaccaggtggcgccctctcctgtcggc
ttccagaacacgcactccccggccagctaccaccccacaccctcccccatggcctaccag
gccagcccgagccccagtccggtaggctacagccccatgacgcccggagcgccctctcct
ggaggatacaacccgcacacccccggatccaacatcgagcaaggcagcggcgactgggtg
accaccgacatcctggtccgggtcaaagactccttcatggacctgatgggacaagttgga
gtgatccggagcgtgacgggcgggatgtgctccgtgttcatgcaggactctgagaaggtg
gtgagtgtcagcagcgaccatctggaacccgtcaccccgaccaagaacaacaaggtgaag
gtgatcctgggggaggaccgcgaggccacagggatcctgctgagcatcgacggagacgac
ggcatcgtccgcatggagctggacgaccagctgaagattctcaacctgcggttcctgggc
cgcctggagcactga
DBGET
integrated database retrieval system
