KEGG   Gambusia affinis (western mosquitofish): 122833508
Entry
122833508         CDS       T07758                                 
Symbol
sdc4
Name
(RefSeq) syndecan-4 isoform X1
  KO
K16338  syndecan 4
Organism
gaf  Gambusia affinis (western mosquitofish)
Pathway
gaf04512  ECM-receptor interaction
gaf04514  Cell adhesion molecule (CAM) interaction
gaf04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    122833508 (sdc4)
   04514 Cell adhesion molecule (CAM) interaction
    122833508 (sdc4)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    122833508 (sdc4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:gaf00535]
    122833508 (sdc4)
Proteoglycans [BR:gaf00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   122833508 (sdc4)
SSDB
Motif
Pfam: Syndecan AA_permease_2 WBS28
Other DBs
NCBI-GeneID: 122833508
NCBI-ProteinID: XP_043977059
LinkDB
Position
LG07:complement(30538998..30550253)
AA seq 204 aa
MISPLCLVLMLSASVLSESQVRETETWMPMSTTQTVAMSTDGGDPEASGDSSNGSDFGFT
DDEDDDYYNEQDDVSGSGEGETGSRPSAKPDFDNRIPDLPDPVRPTDDEVDLVKNRNEFP
RLGGEPRAKEENPSNVLMSQARGDSIFNKTEVLAAVIAGCAVCLMFAVLLILLLIYRMKK
KDEGSYDLGKKPIYKKAPTTEIYA
NT seq 615 nt   +upstreamnt  +downstreamnt
atgatttcccccctgtgcctcgtgttgatgctgtccgcctccgtcctctcagagtcgcag
gtcagggagacggagacctggatgcccatgagcaccacgcagacggttgccatgtcgacg
gacggcggcgacccggaggcatcgggagactcttcgaacggctccgacttcggtttcaca
gacgatgaagacgacgattattacaatgaacaagacgacgtgtccggatccggagaagga
gaaaccgggtccagaccttcagccaagcccgactttgacaaccggatccctgacctgccg
gacccggtgcgaccaacagacgacgaggtggacctggtgaagaaccgaaacgagtttcct
cggctgggcggcgaacccagagccaaggaggagaacccgtccaacgttctgatgtcccag
gccagaggggacagcatcttcaacaagacggaggtcctggcagctgtgatcgccggctgc
gccgtctgcctcatgttcgccgtgctcctcatcctcctcctcatctaccgcatgaagaag
aaggacgaaggcagctacgacctggggaagaagcccatctacaagaaggcccccaccaca
gagatctacgcgtag

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