Gambusia affinis (western mosquitofish): 122833787
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Entry
122833787 CDS
T07758
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122833787 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122833787 (smarcd1)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122833787 (smarcd1)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122833787 (smarcd1)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122833787 (smarcd1)
PBAF complex
122833787 (smarcd1)
GBAF(ncBAF) complex
122833787 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122833787
NCBI-ProteinID:
XP_043977602
LinkDB
All DBs
Position
LG07:complement(27091583..27105870)
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AA seq
515 aa
AA seq
DB search
MAARGGFQSTPTAGGGGAMGPGPPVPGAAPGMGPGTPSGRMGPTSGAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGSSPVSRPGMPGVMDPSRKRPAPQQIQQVQQQQNRN
QHTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPR
LARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDFKTITDVVGNPEEERRAE
FYYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggggggtttcagtcaacaccgactgctggtggcggtggagcaatggga
cctgggccaccggtaccaggcgcagcgccaggtatgggacctgggactccctctggaaga
atgggaccgacgtcaggcgcacagaaccacatgtaccgctctccgatgcccgggcctggg
tacccgagaccgggcatgcccccatccagccgtatgaccccgcagggccccgccatgggc
ccaccgggttacggcagcagccccgtgtctcgccctgggatgcccggcgtgatggacccg
tcccggaaaaggcccgctcctcagcagatccagcaggttcagcaacagcagaaccgcaac
cagcacacaaagaagaagaagatggctgataaaattctacctcagaggatcagagagttg
gtcccagagtctcaggcttacatggatcttctggcttttgagaggaagctggatcagacc
atcatgcgtaaacggctcgacattcaggaggccttgaaaaggcctataaagcaaaagaga
aagctccgaatttttatatccaacaccttcaatcctgcgaagcctgatgctgaggatgga
gaaggcacagttgcatcatgggagctgcgtgttgaagggcgactattagaagatactgct
gtgtccaagtatgaagctaccaaacaaaaaagaaagttctcctccttctttaagtcactt
gtgatcgaattggataaagacctgtatggaccagataatcaccttgtggaatggcacagg
acggccactacccaggagacggatggtttccaggtgaagaggcccggtgatgtgggagtt
cgctgcaccgtcctgctcatgctggattaccagcccccgcagttcaagctggacccccga
ctggcccgtatgttgggtatccacactcagaccagacctgtcatcatccaggctttgtgg
cagtacgtcaaaacacacaaactccaagatccgcatgagcgcgagttcatcaactgtgac
aaatacctccagcaaatttttgaaactcagcgaatgaagttttctgaaatcccacagcgc
ctacatgccctgctgatgcctccagaaccaatcatcatcaaccatgtgatcagtgtggat
cccaatgatcaaaagaagactgcttgctatgacattgatgtggaggtggacgacacgctg
aagacccagatgaactcattcctgctctccacagcaagtcagcaggaaatagcaggactg
gataacaagatccatgaaactattgagaccatcaaccagctgaaaacccagagggagttc
atgttgagttttgccagggatcctcagggctttatcaacgactggcttcagtcccagtgc
agggacttcaagaccattacagatgtggtgggaaacccagaagaggagcggagagcagag
ttttactatcagccatgggctcaggaggcagtgtgtcgctacttctactccaaagtccag
cagagacggcaggagctggaacaggcgcttggaatcaggaacacttga
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