Gambusia affinis (western mosquitofish): 122833873
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Entry
122833873 CDS
T07758
Symbol
hcfc1a
Name
(RefSeq) host cell factor 1a isoform X1
KO
K14966
host cell factor 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03083
Polycomb repressive complex
gaf04980
Cobalamin transport and metabolism
gaf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122833873 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
122833873 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122833873 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gaf01009
]
122833873 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122833873 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
gaf03029
]
122833873 (hcfc1a)
Protein phosphatases and associated proteins [BR:
gaf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122833873 (hcfc1a)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
122833873 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
122833873 (hcfc1a)
MLL-HCF complex
122833873 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
122833873 (hcfc1a)
Mitochondrial biogenesis [BR:
gaf03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
122833873 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
122833873
NCBI-ProteinID:
XP_043977752
LinkDB
All DBs
Position
LG07:5420167..5438235
Genome browser
AA seq
1769 aa
AA seq
DB search
MSAPGSAVSGTTPSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
PGSSVVGWDIPITYGVLPPPRESHTAVVYTEKTTRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVGGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPAAASPATSATPSQ
PINSPKSPAPAAAAPSAQSLQQTGDQHSHCKVKKLYWVTKMKSQLYAFCWFTAVLKVAAQ
QAATGASVVTVRPSQPGKSPVTVTSLPPGVRMVVPTQTTQGSPIGSSPQMSGMAALAAAA
AATQKIPPSSGGTVLNVPAGATILKTVAVSPGTTTVKVASPVMVSNPATRMLKTAAAQVG
TATASSPTTTRPIITVHKSGAVTVAQQAQVVTTVVGGVTKTITLVKSPLTMGSSGTLISN
LGKMMSVVQTKPVQTSAVTGQASTNPLTQIIQTKGPLPAGTILKLVTSADGKPTTIITTS
QAGGTGNKPTILNISGVSPTTTKQGTTIIKTIPMSAIMTQPGATGVTSSAGMKTPITILT
TKVMTSGSPGKIITAVPKLSTAAGQQGLTQVVLKGAPGQPGTILRTLPMSTVGGVRLVTP
VTVSSVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLVGASADSSSASLVTPITTLANIATL
SSQVINPAAITVSAAQTSLTSTSTLPSSTMTVQNQPTQVTLITTPSGVEAQPVQDLPVSI
LASPTSEQPSSTEAGATGDGSGTVTLVCSNPPCETHDTGTTNTATTSSATIGAGQVCSNP
PCETHETGTTNTATTSSATIGAGQVCSNPPCETHETGTTNTATTSSATIGAGQVCSNPPC
ETHETGTTNTATTASSNMSTLRVCSNPPCETHETGTTNTATTATSNMGGAQQVCSDPPCE
THVTGTTNTATQASSSMNAGETGTVQSSHQNPPSETHESGTSDTPSASTSSVEEDQSSTA
TGQIQRVCSNPPYETHETGTTNTATTATCNMETGEGTAAQQTEEGAEGTSTTEEAATTAA
TSVATTTQGRAITTVTQSTPAPGPSVPSISSITEGVSTAASSTEEPMETEEPASAEAAPA
EEPAAAMETQAEGEAAAATALNLPSELMSEAQGTTLMVTGLSDEELAVTAAAEAAAQAAA
TEEAQALAIQAVLQAAQQAVMNEGDGSGESQQPTNIPIMLTQQELAALVQQQQQLQEAQA
AAQQASVDTSMPTEGLAPADSLNDPSVESNGHNEMAASVTSAVASLLPRTTAETLAPSST
FAASISVASPAKLQAAATLAEVANGIEVEKQAPQPAPVKPVVKKENQWFDVGIVKVTNMV
VTHFYVPGDDSQGDDDSGAVPDYGQMKKMELQPGTAYKFRVAGINACGRGTFSEISAFKT
CLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQTAEAKASTPAQL
AFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQESGKD
ATSAKPAPKRPGTSPDTKTTGPKKARTDQ
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggttccgcggtgtctgggaccactccgtcggttctgcagccgcgatgg
aagcgggtcctcggatggtccggtccggtccctcggcccaggcacggacacagagctgtg
gctataaaggagctgatggttgtttttggaggtggaaacgaaggaattgttgacgaatta
catgtatacaacacggcgacgaaccagtggtttatcccagcagtccgtggtgacatccct
ccaggttgtgctgcatatggttttgtatgtgatggaacacggttgctggtttttggtggg
atggtggaatatgggaaatacagcaatgatctctatgaactacaggccagcagatgggag
tggaaaaaactgaaagccaaaaatccaaaaaacggcccaccaccttgtcctcgactcggt
cacagcttttcgctcgttggcaacaaatgctacttgtttggtggactggccaatgatagt
gaagaccccaaaaacaacattccccgatacctaaatgatttgtacacactcgagcttcgt
cctggttctagcgtggtcgggtgggatattccaatcacatatggcgtcctgcctcctcct
cgtgagagtcacaccgctgtggtgtacacagaaaagacgaccaggaagtcacgcttgata
atctatggaggaatgagcggttgtcgccttggagatctctggacgcttgacatagatacc
ctgacttggaacaaaccttcagtaggtggtacggcacctcttccacgaagtcttcactct
gccaccacaatcacaaacaagatgtacgtttttggcggctgggttcctttggtaatggat
gacgtcaaagtggccacacacgagaaagaatggaaatgcacaaacacactcgcttgccta
aatctcgactccatgtgttgggaaacagtgttgatggataccctggaggataacatcccc
agggcccgtgctggtcactgtgccgtggccatcaattccagactgtatgtctggagcggc
cgtgacggttatcggaaagcatggaacaaccaagtgtgctgtaaagacctttggtacctg
gaaacagagcggccccacgctcccgccagggtccagttagtccgtgccaacacaaactct
ctggaggtgagctggggtgcagtctccaccgccgacacgtacctgctgcagctgcagaag
tacgacatccccgcgaccccggcggcagcctcgccagccacgagtgcaacgccttcgcaa
cccatcaactctccaaagagccctgcaccggccgctgcagcaccctccgcgcagagttta
caacagacaggtgaccagcactcacattgcaaagtaaagaagctctactgggtaacaaaa
atgaagtctcaactttatgccttctgctggttcacagctgttttaaaggttgcagctcag
caggctgccacaggcgcatctgttgtcacagttcgcccgagccagccggggaaatccccc
gtcaccgtgacgtcccttcctccaggtgttcgaatggtagtgcctacccaaaccacccaa
ggatcgccaattggaagcagccctcagatgagtggcatggcagctttagctgctgcagct
gcagccacacagaagatcccaccctcttcaggaggcaccgttctcaatgttcccgcgggg
gccaccatcctcaaaacagtggctgtctccccaggcaccaccacggtgaaagtggcttct
cctgtaatggtcagtaacccagccacccgcatgttgaagacggccgcggcgcaggtgggc
acggcaaccgcgtcctctcccaccaccaccagaccgatcatcactgtgcacaagtctggg
gctgtcacagtggctcagcaggcccaggttgtcaccactgtggtgggaggagtcaccaag
accatcactctggtcaagagtcctctcaccatgggcagcagcggtactttgatctccaac
cttggcaagatgatgtctgtggtgcaaaccaaaccagtgcagacatcagctgtcacaggc
caggcttccactaaccctctcacccagatcatacagacaaagggtcccctcccagctggc
accatcctgaaactggtgacttctgcagacggcaagcccacaacaatcatcacaacgtct
caggccggaggcacaggaaacaagcccacgatcctcaacataagtggcgtctcgcctact
actaccaagcagggaaccaccatcattaagaccatccccatgtcggccatcatgacccag
cctggagccacaggcgtgacgagcagtgcaggcatgaaaacaccaataacgatccttacc
accaaggtaatgacctctggatcgcctggtaaaattattactgctgtgcccaaactgtcc
actgcagctggacagcagggactgacgcaggtggtattaaagggcgctccaggacagccc
ggcactattttgcgtacattgcccatgagcacagtaggcggtgttcgtctggttacgcca
gtgacggtctcctccgttaagcccactgttaccacgctggttgtcaagggaactactgga
gtcaccactcttggcaccgtcactgggacggtgtccacaagtttggtaggagcctcagct
gacagctccagtgcctccctggtgacgccgatcaccacgctggcgaacatcgctacactg
tccagccaggtgatcaacccggccgccatcacggtctcggctgctcagaccagtctgact
tccacttcgactctgccttcctctacaatgacagtgcagaaccagcccacccaggtgacc
ctgatcacaacccccagtggtgttgaagcccagccagtccaggatcttcctgtgtccatt
ctggcttctccaacctctgaacagcccagctccactgaggcaggagcaactggagacggt
tctggtaccgtcaccctggtctgctccaacccgccctgtgagacccatgatacaggaact
accaacaccgccaccacctcctccgctacaatcggagctggacaggtctgctccaacccg
ccctgcgagacccacgagacgggaaccaccaacacggcaacgacttcctccgctacaatc
ggagctggacaagtctgctccaacccgccctgcgagacccacgaaacaggaaccaccaac
acggccaccacctcctccgctacgatcggagccggacaagtctgctccaacccgccctgc
gagacccacgaaacaggaaccaccaacacggcaacgacggcgtcttcaaacatgtccaca
ttacgcgtgtgctccaacccgccctgcgagacccacgaaacggggacgacaaacacggcc
accacggcgacctccaacatgggcggggcccagcaggtgtgttcagatcccccctgcgag
acccacgtgacgggcaccaccaacacagcaacacaagcttcctccagcatgaacgccggc
gagacgggcaccgtgcagagctctcaccaaaatccacccagcgaaactcacgaatcaggg
accagcgacactccgtccgcatccacctccagcgtagaggaggaccagagcagcacagca
acgggccagatccagagggtctgctccaacccgccttatgaaacgcatgagactgggacc
accaacaccgccactacggctacctgcaacatggagaccggtgaaggcacagccgcccag
cagacagaggaaggagcagaaggaacaagcaccacagaggaagctgctaccactgcagct
actagcgtagctacaaccacccaaggcagagccatcaccacggtcactcagtccacaccg
gcccctgggccctcagtaccgtcaatttcctcaatcacagaaggagtaagcactgcagcc
agcagcacggaggagccgatggagactgaagagcctgcatcagcagaagctgcacctgct
gaggagcctgctgcagccatggagacacaagcagaaggagaagcagcagctgcaacggcc
ttgaacctgccctcggagctgatgtctgaggcccaggggaccacgctgatggtgacgggg
ctgtcggacgaagagctggccgtgaccgccgccgctgaggcggctgcccaggctgcagcc
acagaggaggcccaggccctcgccatccaggctgtcctgcaggcagcgcagcaagccgta
atgaatgaaggcgacggttctggggaaagccagcagcccaccaacatccccatcatgctg
acccagcaggagctagccgcactggttcagcagcagcagcagctacaggaagctcaggcc
gcggcgcagcaggcctccgtggacaccagcatgcctaccgagggcctggcccccgccgac
agcctcaacgacccgtcagtcgaaagcaatggacacaacgaaatggctgcctcggtcacc
agcgccgtggcgtcccttctaccacgtaccactgctgagactctggctccatcgagtacg
tttgcggcgtctatatcagtagcaagtccggccaagctgcaggcggcagccactctcgcg
gaggtggccaatggcatcgaggtagagaaacaagccccccagcctgcgccagtgaagcct
gttgttaaaaaggagaaccagtggtttgacgtcgggatcgtaaaagtgacgaatatggtc
gtcactcacttctatgtgccaggagatgattctcaaggagatgacgactctggcgccgta
ccggactacggccagatgaagaagatggagctgcagcccggcacggcgtacaagttccgc
gtggcggggatcaacgcctgcgggcgtggaacgttctctgagatttctgctttcaagacc
tgcctacccggattcccaggagccccttgtgccatcaaaattagcaagagcccagatggc
gcccacctgacctgggagccgccttcggtcacgtcagggaaaatcatagagtactcggtg
tacctggctatccagagcagccagacggccgaggccaaggcctccaccccggcccagcta
gccttcatgcgagtgtactgcggacccaacccctcgtgcttggtgcagtcgtccagcctc
tcaaacgctcacatcgattacacgactaaaccagccatcatcttccgcatcgccgcccgc
aacgagaagggctacggtcccgccactcaagttcgatggctacaggaatctggtaaagac
gccacttctgcaaaacctgcccccaaaagacccggcacctctcctgataccaagactact
ggtccaaagaaagcaaggacggaccagtga
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