Gambusia affinis (western mosquitofish): 122834546
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Entry
122834546 CDS
T07758
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122834546 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122834546 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122834546 (col2a1b)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122834546 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
122834546
NCBI-ProteinID:
XP_043979006
LinkDB
All DBs
Position
LG07:20817778..20869477
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AA seq
1491 aa
AA seq
DB search
MLSFMDSRTVLLLVASQVCLLAVVRCQLEDDQEDASACRHEGQLYNDKDIWKPEPCRICV
CDTGTVLCDDIVCEELRDCPKPEIPFGECCPICPADQPPPFGGPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGPRGEKGEKGSLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGQS
GPMGPRGPSGPPGKPGDDGEPGKPGKSGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPP
GPVGPAGASGFPGSPGAKGEAGPTGARGPEGAQGSRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIAGFKGEAGPKGEIGPA
GPQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGHKGAPGERGPP
GASGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGESGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGPE
GASGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGPAGVRGAPGDRGETGPPGPAGFA
GAPGADGQPGTKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDPGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGAS
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFT
GLQGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGDS
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVNPKPAKIPRKNWWSSKSKERKHVWFGETMNGGFHFSYGDDSLAPNTASIQMT
FLRLLSTEASQNLTYHCKNSVAYLDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCARHTGQWGKTVFEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactgtactgcttcttgtagcatcccaagtttgtcta
ttagccgttgtgagatgtcaactggaagatgaccaggaggatgcttctgcctgtagacac
gaaggacaactttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacacgggaacggttctgtgtgatgacattgtctgcgaggagctaagagactgcccc
aaacctgaaatcccatttggagagtgttgccccatctgccctgctgaccagccaccacct
tttggaggaccaggagccaagggtcagaagggtgaacctggagatattacagatgttgta
ggaccaagaggaccatccggccccatgggcccaccaggagagcaaggaccccgaggacca
agaggagaaaaaggagagaaagggagccttggtcctcgtggcagagatggtgaacctggc
acccctggaaaccctggaccccccgggcctccaggacctaatggaccccctggacttggt
ggaaactttgctgctcagatggccggtggttttgatgagaaggccggaggtgcacagatg
ggtgtgatgcaaggaccaatgggccccatgggacccagaggaccacctgggccctcagga
gcacctggcccacaaggtttccaaggcagcccaggagaggctggagagcctggacaatct
ggccccatgggtccccgtggcccctccggtcctcctggaaaacccggagatgatggtgaa
ccaggtaaaccagggaaatcaggtgaccgtggacccaccggacctcagggagctcgtggt
ttcccaggaactcctggtctgccaggcatcaagggacacagaggttatccaggtcttgac
ggtgcaaagggagaaactggtgctgttggtgcaaagggtgaggctggtgctcccggcgag
agcggcgctcctggacccatgggaccacgtggtttgcctggggagagaggacgtcctgga
tccactggagctgctggtgcacgtggaaacgatggcttgcctggtcctgctggtcctcct
ggccctgttggtccagctggagcttcaggcttcccagggtctccaggtgcaaagggtgaa
gctggtcccactggcgcccgtggacctgaaggagctcagggatcccgtggagagtcaggc
actcctggatcacctggaccctctggcgcttctggtaaccctggcactgacggtatccct
ggagctaaaggctcagcaggtgctccaggtatcgcaggggcccctggcttccctggacct
cgtggacctcctggacctcagggagcaactggacctcttgggccaaaaggaacatctgga
gatccaggtattgccggattcaagggcgaagctggaccaaagggagaaattggaccagct
ggacctcagggagcccctggccctcaaggagaagaaggcaagagaggacccagaggtgag
cctggtgctgctggacctcttggacctccaggagaaagaggagctcctggtaaccgtggt
ttccctggtcaggatggtctggctggtcacaagggagccccaggtgagcgtggaccccct
ggggccagtggtgccaagggagccacaggcgaccctggccgtcctggagagcctggtctt
cctggtgcaaggggtctcactggtcgtcctggtgatgctggacctcagggcaaagttggg
ccttctggagctccaggtgaggacggacgtccaggacctcccggccctcagggagccaga
ggacagcctggtgtcatggggttccctggacccaaaggagcaactggtgaatctggcaaa
tctggtgagaaaggactggccggagctcctggtctgagaggtctgcctggaaaagatgga
gaaacgggcgcggctggaccccctggccctgctggccctgctggggagagaggagagcaa
ggacagcctggtccatctggtttccagggtcttccaggacctcctggccctcccggtgag
ggaggcaaaccgggagaccagggcgttccaggagaagctggagctgctggtgccactgga
cccagaggagagcgtggttttccaggagagagaggagctgctggaccacaaggtttgcag
ggacccagaggtctgcctggaactcctggaactgacggacccaagggagccattgggcct
gctggaggtccaggagctcagggcccaccaggcctacagggtatgccaggagagagggga
gctgctggcattcctggacccaaaggagacagaggtgatgttggagagaaaggacctgaa
ggtgcttccggcaaagatggcgccagaggtcttactggtccaattggtcctcctggtcct
ggtggtccaaatggcgagaagggtgaatctggacctgctgggccatctggacctgctggt
gttcgtggtgcacctggagacagaggagagacgggacctcctgggcctgctgggtttgct
ggagctcctggagccgatggtcagcctggaaccaaaggagagcagggagaagctggacag
aaaggagatgctggagcccctggtccccaaggaccatccggtgcccctggccctgcaggt
cctacaggtgtttctggacctaaaggtgctcgtggtgcccagggtcctcctggtgccact
ggtttccctggagctgctgggcgagttggacctcctggccccaacggtaatcctggacct
gcaggtcctgctggccctcctggtaaagacggaccaaaaggagtgagaggagacggtgga
cctccaggcagacagggcgacgctggactacgcggtcctgcaggagctccaggagagaag
ggggaccctggagaggacggtcctcctggtccactaggtccctcaggtcctcagggattg
gctggtcagcgcggtattgttggtctacccgggcagagaggagaaagaggtttccctggt
ttgcctggaccttctggtgagcctggaaagcagggagcctctggtggtcctggagaccgt
ggaccacctggaccagtcggaccacctgggctcactggtcctgctggagaacctggtaga
gagggcaaccctggatctgatggacctcctggtagagatggttctcctggaattaagggt
gaccgtggcaacacgggtcctgctggtgctcctggtgctccaggtgctcctggggcttcc
ggcccagtcggtcccaccggaaaacagggagacagaggggagtctggtgcccaaggacca
gctggacctccaggacctgccggtgccagaggaatgcctggaccccaagggccccgtggt
gataagggtgaagctggagagtctggtgagagaggacagaaggggcatagaggtttcact
ggtctgcagggtctccctggaccaccaggtcaacctggagaccagggtgccactggacct
gctgggccttctggacaaagaggaccacctggacctgttggtcctgctggaaaagacggg
tcaaatggcttaccaggacccatcggaccccctggacctcgtggtcgtactggagactct
ggtcccgctggtcctcctggaaaccctggaccccctggtcctcctggtccccccggtcct
ggtattgacatgtctgccttcgctggtctgggtcaaacagaaaagtctcccgatcccctg
aggtacatgagggcagaccaggctgctgggaatctacgtcaacatgacgcagaggtcgat
gccactctcaagtcactcaacaaccagattgagaacatccgcagcccagagggatccaag
aagaaccctgcccgcacctgcagagacctgaagctctgccatcccgactggaagagcggc
gagtactggattgatccaaatcaaggctgcactgtagatgcaatcaaagttttctgcaat
atggaaaccggggagtcctgtgtgaaccccaaacctgccaagattcctcgcaagaactgg
tggtccagcaagagcaaagaacgcaaacatgtctggttcggagagacaatgaacggagga
ttccatttcagttacggtgacgacagcctggcacccaacaccgcctccattcagatgact
ttcctgaggttgctgtcaacagaggcttcccaaaatctcacttaccactgtaagaacagc
gtggcctacttggatgcttcaacaggcaacctgaagaaggccgtcctgctgcaaggctcc
aacgatgtggagatcagagccgagggcaacagccgcttcacctacagcgtcatggaagac
ggctgcgcgagacacacgggacagtggggtaagacagtgttcgaatacagatcgcagaag
acctcacgtctgcccatcgtggacattgcccccatggatattggtggagcagaccaggag
tttggagtcgacattgggccagtttgcttcttgtaa
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