Gambusia affinis (western mosquitofish): 122835072
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Entry
122835072 CDS
T07758
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122835072 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gaf03310
]
122835072 (roraa)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122835072 (roraa)
Nuclear receptors [BR:
gaf03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122835072 (roraa)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122835072
NCBI-ProteinID:
XP_043979732
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Position
LG08:complement(8740882..8950737)
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AA seq
525 aa
AA seq
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MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPAPVRKQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
NYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSAVKCIPPDRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLR
ALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggaccatccagccccg
gttcgaaagcagacctgctcaagcaccaacagaggtatctcggtaacaaagaagacacac
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcgtactcctgcccccgtcagaaaaactgcttgatcgaccgcaccagccgcaaccgc
tgccagcactgcaggctgcagaagtgcctggcagtgggaatgtcacgagatgcggtgaag
tttggccgcatgtcaaagaagcagcgagacagcctgtacgctgaagtccagaagcaccgg
ctgcagcagcagcagcgagaccaccaacagcagcccggagaggcagagccgctcacacct
aactacggcctctcagccaacggcctaacggagctacacgatgacctcagtggctacatg
gacggccacactcctgatggcagcaagcccgactcggcggtcagcagcttctacctagac
atccagccgtcccctgaccagtcgggcttagacatcaacggcatcaagccggagcccatc
tgcgactttgcccccggctctggcttttttccctactgctccttcaccaacggcgagacc
tcccccactgtttccatggctgaactagagcacctcgcccagaacatctcaaagtcacac
atggagacatgtcagtacctgagagaggagttgcagcagatgacctggcaggctttcctt
caagaagaggtggagagctaccagagcaagccccgggaagtcatgtggcagctgtgtgct
atcaaaataacagaggccattcagtatgtggtggagtttgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctctggaagttgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacacagtctatttcgatggaaaa
tatgccggacctgatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctct
gcttttgtgttgatgtctgctgtgaaatgtattcctccagaccgatcttggcttcaggag
aaggtgaaagtggaaaaactccagcagaagatccaactggcccttcaacatgttctgcag
aagaaccacagagaggatggcattcttacaaagttgatatgcaaagtgtcgacactgcga
gcgctgtgcagtaggcatacagagaagctcacggctttcaaagcaatatacccagacatt
gtgcgtgcccacttcccccccttatataaggagctgttcggatcagactttgagcagtcc
atgcccgtcgatgggtaa
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