Gambusia affinis (western mosquitofish): 122835376
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Entry
122835376 CDS
T07758
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03022
Basal transcription factors
gaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122835376 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
122835376 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122835376 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122835376 (gtf2h1)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122835376 (gtf2h1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122835376 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
122835376
NCBI-ProteinID:
XP_043980354
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All DBs
Position
LG08:7087545..7094552
Genome browser
AA seq
549 aa
AA seq
DB search
MASLSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYSDIRCQKISPDGK
AKIQLQLVLHTGDSTTFHFANESTALKDRDAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLGGMNNGEPATCNKQEVGISGAFLADIRPQTDGC
NGLRYNLTADIIESIFRTYPAVKQKYSENVPHNLTEKEFWTRFFQSHYFHRDRINTGSQD
IFSECAKQDEKGLKSLVTQGVKNPLVDLLSLEDKTLDEGYGISKALPSTSNANKSVKESS
NSAIIKRFNHHSAMVLAAGSRKGDVPTDQASETSSTDGNSRDSDFFQPPLKKVKLQEAIE
YEDLQRENTPKTVALNLKKSDRYAHGPVPLQSQQYTTSQDIINSVGYIQQEMANYKPNLT
RVLSSTTATSAIAALSPGGVLMQPVGQQSIHQMVPNDIQGELKHLYIAAGELLRHFWSCF
PVNTPFLEEKVTKMKTNLERFQLTKLRPFQEKIQRQYLSANLTGHLEDMFQSAYNKFHIW
QTRRMMRKT
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcatctctgtcagaggaggttttgctggtggtgaagaaagtccgtcagaggaagcag
gatggcacactctacttgatggctgaaagaatagcctggggtccagaaggcaaagaccgc
ttcactgtcagccacctgtattcagacatccgctgtcagaaaatcagtcctgatggtaaa
gccaagattcagctccaactggtccttcacaccggagatagtaccacattccactttgcc
aatgagagcaccgcacttaaagaccgagatgctgccaaggagctgctgcagcagctactg
ccaaagttcaagaagaaggccaacaaggagctggaggagaaaaacaggatgcttcaggaa
gatccggtgcttttccaactgtacaaagatcttgtggtaagccaagtgatcagtgctgag
gaattttgggccaaccggttaggaggcatgaataatggggaacctgcaacttgcaacaaa
caggaagttggaatatctggagcatttctggcggacattagaccacagactgatggctgc
aatggcttgagatataatctgactgcggatattattgagtccatatttagaacatatcct
gcagtgaagcagaagtatagtgaaaatgtgcctcataacttgacggagaaggagttctgg
acgcgctttttccagtctcattatttccacagagaccgcatcaacacaggttcacaggat
attttctctgaatgtgccaagcaggatgagaaagggttaaaatctctggtgacccaagga
gtgaagaatccattggttgaccttttgtcattggaggacaaaacattagacgagggttat
ggaataagcaaagccctaccttcaacctcaaatgcaaacaagtcagtgaaagagagtagt
aactctgccattataaagcgattcaaccatcacagcgctatggtgctggcagcaggctca
cgcaagggagatgttcccaccgaccaagccagtgagactagcagcacagacggcaactcc
agagattctgatttctttcagcctccactgaagaaggttaaactacaagaagccatagaa
tatgaggatctgcaaagggaaaatactcctaagacagtggcgttaaatctgaagaagtct
gacaggtatgctcatggtcctgttccacttcagtcccagcagtatacaaccagccaagac
atcatcaactctgttggctacatccagcaggagatggccaattacaaacccaacctaact
cgggtgttgtccagcaccacagcaacctctgccatcgcagcgctctctccaggaggcgtc
cttatgcagcctgttggacagcaatccatacaccaaatggtgcccaatgacatccaagga
gagctgaagcacctttacattgctgcaggggagttattgagacacttttggtcctgtttt
cccgtaaacacaccatttttggaggaaaaggtgacaaaaatgaagacaaacttggaaaga
tttcagttgaccaagcttcgaccttttcaggagaaaatccaacgtcagtacttgagtgca
aatcttaccgggcacctggaggacatgtttcagtcggcctataacaagtttcatatttgg
caaacccgcaggatgatgaggaaaacctga
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