Gambusia affinis (western mosquitofish): 122835606
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Entry
122835606 CDS
T07758
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
122835606 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gaf04515
]
122835606 (lrrc4ca)
Cell adhesion molecules [BR:
gaf04515
]
Immunoglobulin superfamily
NGL family
122835606 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Ig_6
Sp38
Podoplanin
DUF6821
DUF4293
Syndecan
Motif
Other DBs
NCBI-GeneID:
122835606
NCBI-ProteinID:
XP_043980710
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All DBs
Position
LG08:complement(14278063..14394569)
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AA seq
644 aa
AA seq
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MFNKMTSSQQQQMMRGPRWNRALSDPLFVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLTPLVKLDELEMSGNQLSVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTQYKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSPENSSFSYFTTVTVETIETPHDEGFTTTVQQKVSP
TSSASIWESPSPTSTTTTTVRTPLFTRATEKSNTIPVTEGSLNGLDEVMKTTKIIIGCFV
AITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVTGGPGMEGHLTLPSLEHE
HLNHYNTYKTAYNHASAMNSIHSSAHEPLLIRATSKDNVQETQI
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagatgacctcttcccagcagcagcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccctttatttgtgctgcttctagccctccagctgctagtagtggca
ggactggtgcgtgctcaaacttgtccttctgtttgctcctgcagtaaccagtttagcaag
gttatttgcacccgcagaagcttgcgagaagttcctgatggcatctctaccaacacacgc
tatttgaatctgcaagaaaatctcatacaggtgataaaggtggacagcttcaaacatcta
agacatttggagattctacagctgagcaaaaaccacatacgtaaaattgagctgggggct
ttcaatggactggcaagcctcaacaccttggagctttttgataatagactcaccaccatc
ccaaacggagcatttgagtacttgtctaagctaaaggagctttggctacgaaataatcca
atagaaagcattccttcttatgctttcaacagagttccctcattacgtaggttggaccta
ggggagctcaaaaggctctcatacatttcagaaggagcctttgaaggattgagcaatctg
cggtacctaaatttgggaatgtgcaatttgaaggaaattcccaatctcactccattggtc
aaactggatgaacttgaaatgtctggaaaccagttgtctgttatccggcctggttcgttt
aaagggcttatccacctgcaaaagctatggatgatgcatgctcaaatccagactatagaa
aggaactcatttgatgaccttcagtcactggtggagcttaaccttgcccataataaccta
acgcttttgccccatgatctctttactcctttacatcatttggagagggtgcacttgcac
cataacccctggaattgcaactgtgacatcctgtggctaagctggtggcttaaggagatg
gtacctgcaaacaccagctgctgtgcccgctgtagctcacctacccaatataagggccgc
tatattggtgagctggaccagaattactttcattgttatgctcccgttattgtggagcct
cctgcagacttaaatgtaacagagggaagtgctgctgagttgaaatgtagagccagctca
ctgacctcagtaagctggattacacccaatggttcaataatgacacatggtgcatacaaa
gtcagaatatctgtgctaaatgatggcacactgaatttcacaaatgttaccatgcaggac
acagggacatacacatgtatggttagtaattctgcaggtaacacaacagcctcagccaca
ctgaatgtgtcctctccagagaacagtagcttcagctacttcaccacagtgacagtagag
acaatagaaactcctcatgacgaaggtttcaccaccactgttcaacagaaagtgagcccc
acatcctctgccagtatatgggaaagtccttcacccacctctactacaacgacaacagtt
cgaaccccactgttcacacgtgcaacagaaaagtccaacacaatacctgtaacagagggg
tcgctcaacggtttggatgaggttatgaagacaactaaaatcatcattggctgcttcgtt
gcaatcactcttatggcagcagtaatgctgattatcttctacaagatgcggaagcagcat
caccagcagaatcatcatgcacccacacgcactattgagatcatcaatgtagatgaggac
tgtgtaacaggaggcccaggcatggagggccatcttactctgccgtctctggagcatgag
cacctcaaccactacaatacctacaagactgcctacaaccatgcctcagctatgaattcc
atacacagctcagctcacgaacctttgttaatccgggccacttcaaaagacaatgtacaa
gagacccaaatctaa
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