Gambusia affinis (western mosquitofish): 122835653
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Entry
122835653 CDS
T07758
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gaf04054
]
122835653 (nlrc5)
Pattern recognition receptors [BR:
gaf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122835653 (nlrc5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
NACHT
NLRC4_HD2
LRR_4
Atypical_Card
NOD2_WH
LRR_8
AAA_30
Motif
Other DBs
NCBI-GeneID:
122835653
NCBI-ProteinID:
XP_043980812
LinkDB
All DBs
Position
LG08:2558671..2590243
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AA seq
1904 aa
AA seq
DB search
MDEELDSDDGNPNSVLAQEYSELVAILRCQLDSVVMQLIQTVPAGSVWLNRQTPGGSAAP
SDHIEAMLQYFSRANTAECSNFLQTVCLLCEGIPMHLESKLMSVAGYSCSDALNNLSTGT
SCLENEDAASSVTDQQPLTPPAEEQLTKRPRIDYWEQYKAEVAGSLQRRWKRLSEGLLKD
VQPDKIWVSIRTANRVRDRPDQTPSSAERGGRTPEPDGDDGWPESRLTLESFLQGCTGKV
TVLAGKPGSGKTLVMSFIGQQWTKGLGPIPSSHLFVLLEFRQLNLLSDPLSLSELLFHHY
LPTNGDNEAKQAVVDYLISNPEQSCWVLDGYDEFQKKLKRHRVQNERLDPEKPLPVSELI
SGLLSRRLLAGSTVLVTSRVRDVVDLDGWSDKVGELLLWDQREIKEGVSNFFSAKDGDLA
ADAAEILFSSRHLLAMSSLPALCNICCVFLQHLLHRHAGKIKMPGEKGVEVKKKRLDIEK
KDAQTPDGMSDSESCSQKAQHGENSEETLMDGAKSRSTFTFTSAQIPATQTQIYLAAVAA
FLSRHPDRTGGNDAAETSGFSESTKFAWKTVILPAAELCELSQLAWRGLEESRIIFLDED
VPLQTLESSIKSGLFSQVEVRGRDGGVVNAYCFLHLTVQEFLAALRIMTSTDVSDADLKK
RFSLKTRWTTKSDQKTVFTDSLYLYVCGLASSDCTPALEVVAKATGIKAAQSWVQKRQAL
VLKLLKALCRSATLTGPKILQLCHCVQESQNQQLAQQVVSVRPTLELRNFCLLPSDIEAL
AFVVSSVGTKGVGLDFGACSMELECLDTLSRCQYIHYLSFRSRKYGDKFAEKLSSVLPRF
TALRKLEFCGASLSSEGAVSLASGLQNCSSVTELNFSDNNLQDEGIRRIADVLAKLQNLT
SVKLGRNNTSLEAADCLVKHVSSCSNIQQVHADGIKELTLTFSQKSESNSRKIKPEASVR
LLNQKWTKSGMQNLAKSLSRCPSLSELDLSGGEWDEETLKMLIQFVPSFSITERIILNDS
CSSVQSLVILTTLLSDCPSVMEMNIRLQDPVQVSVEFSAGREKPANVSSKTLCLSRCNLQ
PIDLERVWKSLGASSDLSDLDLSCNKLGDKGLKKLLDFLPRLSKIQQINFSGNDVGVDGV
VLLAGALCSSNRLTHVYISDGGKDQVMLQFSSDTSNGKLKTKLFRINRRSLTASDVNKVC
RKLVQCGTSLELELTHCSFAEKSIENLLRELPKMSTLQRLNVSNSILSTFDALTLISCFP
DNHQVSSVELSPQGESFIRFAGIKAEQVNCRLTDFSFKEENLVLLDRLNQILQQTRQFSY
LDLSGNQLEDEGVRCLLESLPNIRVSSFINLSKNRLSQQGALHVATTLCTCTNVSAVEVS
LGEDERCLIWFTQKGGGEKTLSVKDSKLQCDHLLRLANIVSECQSLTKVELKNNMLQSEW
IENFVTALNVNLRGCTISVEERWIGGDDAAFLLRRCLRLHKPVQTIRIDDKTLQLVLMDN
MESDVAFSAQSAIKNISVSNSSVEGDKLLCSLLPSLPNLTSLSVGIKDSTVAEELLHVIL
SSTSIQSLNLSGVLISDAAAQTLTRLLPRLRSFKSSHCVWSAAGRLLLIETLKKSAALEE
LCLDAAMQLNEDCSRGLAQTLRNMRSLQILKLDEIVKSSGQPEADVVLDLLAGMEELNLI
QEIQLGGWRMGDGGIQKLTGILPGWKDLRTISLSKNLVSDPSGEKLLEALSGCRHLEELH
LSRNHIGDLTAARMALVLPSMSLLSVLDISENRVGNEGLFSLSRAIMSLKNLRKIHLTSV
GSSELSAVAASLSHCPFIEDVGFGWNNCEDAVALELANVLPVCHHLTRIDLECNSVSAGG
VEALVRALRCCPALQVIRLWKNKVSWSEAQRFSQMERRLNFSST
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagctcgactctgacgatggaaatccaaactccgtcttggctcaggaatac
tcagagctggtcgccatccttcgctgtcagttggactcggtcgtaatgcagcttatccaa
acggtgccggccggttctgtgtggctgaacagacaaacacccggcggctctgctgcacca
tcagaccacatcgaagccatgctgcagtacttcagtcgcgccaacactgcagaatgcagc
aacttccttcagacggtttgccttctgtgtgagggcatccccatgcatctggagtcgaag
ctcatgtcagtggctggatattcatgcagcgatgctttgaataatctatcaactggaaca
tcatgtttggaaaatgaagatgcagcctccagtgtgacggatcagcagccgttaacgccg
cctgcagaggagcagctcaccaaacgcccacggattgattactgggagcagtacaaggct
gaagtggcaggttccctgcagaggaggtggaagcgactgtcggagggcctgctgaaggat
gtgcagccggacaaaatctgggtcagcatcagaactgcaaacagagtcagggacagaccg
gatcagactcccagctctgcagagagaggcggcagaactccggagcctgacggtgatgac
gggtggccagagtccagactgactctggagagttttcttcagggatgcacaggaaaagtg
acggttctggccggcaaacctggctcaggaaaaactctggtaatgtctttcatcgggcaa
cagtggactaaaggattaggccccatcccttcatcccatctgtttgtcttgttggagttt
cgtcagctcaacctcctgtcggaccctctctccctctctgagctgctgtttcaccactac
ctcccaactaatggagacaatgaagcaaagcaggccgttgtggactacctcatttccaat
ccggagcagagctgctgggtgctggatggttacgatgagttccagaaaaaactaaagaga
cacagagttcagaacgagcggctggacccagagaaacctctgcctgtgtcagagctcatc
tcagggctgctgagccggcggcttcttgcagggagcaccgtgttggtcacgagtcgagtc
cgcgacgtcgtagatttggacggttggtctgacaaagtgggggagctgctgctgtgggac
cagcgtgaaatcaaagagggtgtcagcaacttctttagtgcaaaagatggagatcttgca
gccgatgcagcagaaatcctcttctccagccgacacctcctggccatgtcttccctcccg
gccctctgcaacatctgctgcgtctttctgcagcatttactgcaccgacatgcaggaaag
ataaagatgccaggagaaaaaggagttgaagtaaagaaaaaacgtttagatattgagaaa
aaagacgcacaaactcctgatggaatgagtgacagtgagagctgctcccaaaaagcacaa
catggtgaaaacagtgaggagacattaatggatggagcaaaaagcagatccacgtttact
ttcacatcagcacaaatccctgcaacccaaactcagatctacctcgctgctgttgctgca
tttcttagccggcacccggaccggaccggaggaaacgacgcagcagagacctcaggattt
tctgaaagtaccaagtttgcatggaaaactgtgattcttcctgctgctgagctttgtgag
ctcagtcagctggcatggagaggtttggaggagagcaggattatctttttggatgaagac
gttcctctgcaaactttagagtcttcaatcaagtcaggactcttctcacaggtggaggtc
agaggtcgtgacggcggtgttgtcaacgcttactgcttcctgcatctcacagtgcaggag
tttctggctgcactcaggatcatgacaagcactgatgtcagtgatgcagacctgaagaag
agattcagtctgaaaactcgctggacgactaaatcggaccagaagacagtgttcactgat
tccctctacctgtacgtttgtggtctggcttcgtcagactgcactccagctctggaggtc
gtcgccaaggcaactgggataaaagcagcccaaagctgggtccagaaacgccaagccctt
gttctaaagttgctgaaagctctgtgccgcagtgccactctgactggaccgaagattttg
cagctttgtcattgtgttcaggagagccagaaccagcagctggctcaacaggtggtgagt
gtgcgacccacgctggagctcagaaacttctgcctgttacccagtgacatcgaggcgctg
gcgtttgtggtcagctcagtcggtaccaaaggtgtcggtttggacttcggcgcctgttcg
atggagctggagtgtctagacaccctgtccaggtgtcagtatattcattacctcagtttt
cggagccgcaagtatggtgataagtttgcagagaagctttcctccgttctacctcgattc
accgcgctgagaaaactagagttttgtggtgccagtctgagttctgaaggagctgtgagt
ttggcgtctggtctgcagaactgttccagcgtcactgagctcaattttagtgacaacaat
ttgcaagacgaaggaatccgacgcattgcagacgttcttgccaaactacaaaacttgaca
tctgtaaagctgggacgaaacaacacgtctttggaagcagcagattgtcttgttaaacac
gtctcttcttgctcgaacatccagcaggttcatgcagacgggatcaaagagttgacacta
actttttctcaaaaatctgaatcaaacagccgtaaaattaagccagaagcgtcagtgagg
ttgttgaaccagaagtggaccaagtctggcatgcagaacctcgccaagtcgctgtctcgc
tgtccctccctgtctgagctggatctgtctggaggcgaatgggatgaggagactttgaaa
atgctaattcagtttgtgccaagcttcagcatcactgagaggatcatattgaatgacagc
tgctcatcagttcagagtttggtgattctcaccactttgctttctgactgtccgtcagtc
atggagatgaacatcaggctgcaggatccagtccaggtgtctgttgagttttctgcaggg
agagaaaaacctgcaaatgtttcctctaaaacactctgcctcagccgctgtaatcttcag
cccatcgacctggaaagagtttggaaaagtttgggagcgtcctctgatctctctgatttg
gacttgtcctgtaacaagttaggcgacaaaggactgaagaagttgttggacttcttgcct
cgtctaagcaaaatccaacaaataaatttcagtggtaatgatgtcggtgtggacggagtg
gtgctgctggcaggtgctttatgctccagcaacagattaacgcacgtttacatcagtgat
ggaggaaaagaccaggtgatgctgcagttcagctctgacacaagtaacggcaaattaaag
acaaagttattcagaattaacagaagatccctgacagcatctgatgtaaacaaagtgtgc
aggaaactggtccagtgtggcaccagtttggagttagagttaactcattgctcatttgct
gagaaatctatcgaaaacctgctgagagagttgccaaagatgtcaacgctgcagagacta
aatgtcagtaacagcatcctgtccacttttgatgcgctaactctgatcagctgtttccct
gacaaccatcaagtttcatccgtggagctcagtccacagggcgaatccttcattcgtttt
gctggaattaaagcagaacaagtcaactgcagattaacagatttttctttcaaagaagaa
aacttggttttattggacagattgaaccagatcctgcagcagacccggcagttctcttat
cttgatttgtcaggaaaccagctggaagacgaaggagtgagatgtttattggagtctctt
ccaaatatcagagtcagcagcttcatcaatctgagtaagaacagactgagccagcagggg
gcgctgcatgtagccacaacactttgtacttgcactaatgtttctgctgtggaagtcagt
ttgggagaagatgaaagatgtctgatctggtttacacaaaaaggaggaggagaaaaaact
ctgagtgtcaaagacagcaagctgcaatgtgatcatctgctcagattagcaaatattgtc
tcagagtgtcagagtttgaccaaagtggagttaaagaacaacatgctgcaatctgagtgg
attgaaaactttgtgacggctttaaacgttaatctgagaggatgtactatcagtgttgaa
gaacgttggatcggcggcgacgacgctgcgtttttactgcgccgctgtctgcggctccac
aaacccgtccaaaccatcaggattgatgacaaaactctacagctggttctgatggacaac
atggaaagtgatgttgcattttcagctcagtcagcgattaaaaatataagtgtctccaac
agcagcgtggaaggagataaattgctctgctctcttctaccctcgttgccaaatctcacg
tctctcagtgttggaatcaaagacagcactgtggctgaggagcttttacacgtcatcctg
agctctacgtccattcagagtttaaacttgtctggcgtcctcataagtgacgcggcggct
cagactttgaccagactgttgccacgccttcgatcgttcaaatcatcgcattgcgtttgg
tcagcagctggacggctgctgcttatcgaaacgttgaagaagagcgccgctttggaggaa
ctttgtctggatgcagcgatgcagctgaatgaagactgcagcagaggtttggcacaaact
ctgaggaacatgagatctttacagattctcaagctggacgaaatcgtaaaaagttcagga
caaccagaagccgacgttgttctggacctgctggccgggatggaagaactcaacctgata
caggagatacagttgggaggctggaggatgggtgatggggggatacagaagctaacggga
atccttcctggttggaaagatctgaggacgatcagtctctccaagaatcttgtgagtgat
ccgtcaggagagaagctgctggaggctctgagtggctgcaggcatctggaggagctccat
ctgtccagaaaccacattggtgacctcactgctgccagaatggctcttgttctcccatca
atgtcgctcctctctgtattagatatttcagaaaaccgtgtcggaaacgagggcttgttc
agtctgtccagagcgataatgagcctgaagaacctcagaaagatccacctgacctctgtg
gggagttcagagctgagcgctgttgctgccagtttgagccactgtcccttcatagaggat
gtgggctttgggtggaataactgtgaagacgctgtggcgctggagctggctaacgttctg
cctgtttgccaccatctgactcgcattgacctggagtgtaacagcgtgagcgctggcggc
gtggaggctctggtcagagcactaaggtgctgccctgctctgcaggtcatcaggttgtgg
aagaataaagtctcctggagtgaagctcagaggttcagccagatggagaggaggctgaac
ttttcctccacataa
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