KEGG   Gambusia affinis (western mosquitofish): 122835883
Entry
122835883         CDS       T07758                                 
Symbol
usb1
Name
(RefSeq) U6 snRNA phosphodiesterase
  KO
K23093  U6 snRNA phosphodiesterase [EC:3.1.4.-]
Organism
gaf  Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gaf03041]
    122835883 (usb1)
Spliceosome [BR:gaf03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    122835883 (usb1)
SSDB
Motif
Pfam: HVSL 2_5_RNA_ligase2 GPAT_C
Other DBs
NCBI-GeneID: 122835883
NCBI-ProteinID: XP_043981265
LinkDB
Position
LG08:complement(17243921..17248350)
AA seq 277 aa
MLVGYSSSSEEDGEPGSEAMCRNRRRSVEEDEGTRDLPAKKARTEELDPKTRLPLPGCLL
SMFPDDDDEALIEDSSLHGGRIRSFKHERGNWATYVYLPYPPEEEFEELLEELLSALGAH
GLILTQQEEFHLSLSQTVVLRHHWIQPFTQSLQSGLSQCRRFACSAATLKVYCNAERTRT
FLGMEVSTGHAQLLDLVRVVDKTMTEFQLDTFYKEPSFHVSLAWCVGDQTEKMKELLQEL
QILVDNREEGPFLLRLDCVEVRCRTGNKTFRFSLKTS
NT seq 834 nt   +upstreamnt  +downstreamnt
atgttggttggttacagcagcagctctgaggaggacggtgaacccggaagtgaagcgatg
tgtcgaaataggcgaagatcagtggaggaagatgagggaacccgagaccttccagccaag
aaagccagaactgaggagctggatcctaaaacgaggctgcctctgcccggttgcctcctg
agcatgttccctgatgacgatgatgaagcactgattgaagacagctcccttcatggtgga
cgtatccgctccttcaagcacgagagaggaaattgggccacttatgtttatctgccttac
cctcctgaggaggaatttgaggagcttttagaggagttgctgtcagccttgggggctcat
ggtctgatactgacgcagcaagaggagttccacctgagtctgtctcagacggtggtgctc
aggcaccactggatccagccatttacacaaagcctccagtcaggcctttctcaatgcaga
aggtttgcgtgttcagcagcaacgctgaaggtctactgcaacgctgagaggacaaggacc
ttcttggggatggaagtgtccaccggtcatgctcagttgttggatctggtccgagttgtc
gacaaaacaatgaccgagtttcaattggacactttttataaggaaccgtcttttcacgtg
agtctggcctggtgtgtgggagaccagacggagaagatgaaggaactgttacaggagctg
cagattctggtagataatcgtgaagaagggccgtttctgttgaggttggactgtgtagaa
gttcgctgcaggacaggaaacaagacttttcgtttctcactaaagacctcgtga

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