Gambusia affinis (western mosquitofish): 122836041
Help
Entry
122836041 CDS
T07758
Symbol
trmt13
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gaf03016
]
122836041 (trmt13)
Enzymes [BR:
gaf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
122836041 (trmt13)
Transfer RNA biogenesis [BR:
gaf03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
122836041 (trmt13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
Motif
Other DBs
NCBI-GeneID:
122836041
NCBI-ProteinID:
XP_043981623
LinkDB
All DBs
Position
LG08:29134126..29137115
Genome browser
AA seq
564 aa
AA seq
DB search
MATPLPSRCSFFVQKKNRFCKMVPGKGRSFCGEHATMVSHVDSVATSQKDLIXISALISS
EVIKAVTCSLFQEEGFGDCRRITCPLDPKHTVAQQNLEKHLKKCNSREKPRPVYYVENIN
AGRVDRDQEFPEVSLAERSRADLESLVEKLKAATEGLQQDMEDRTLSHPVLQEELSDPKN
GGSAHKHLKQQASLLGHLQEMGLLSRGRCFVEFGAGRGKLSHWIHRALQKPEGQGVAMET
SQDLQLLLVERCSTRFKVDGKHQGSADPFERLQVDIQHLDLSKVPVLREKALPLVGVGKH
LCGAATDLALRCLLDTARAQSDTQLLPKHLRGPEPGTGTGPVLGLAVALCCHHRCEWRHY
VGQQFFLQRGLGPAEFSTFCRMSSWATCGPPANHSGGTSQSGGASQRGGASQSGGASQSG
GASQRGGASHSGGASPSGGTSQSGGASHSGGASQSGGASQSGGASQRGGASHSGGASQRG
GASQSGGASQSGTAEDHEEAEQLAVLSRFWSAAEREHLGRLCKLMIDSGRRDFLRTRGFS
SRLIGYADPEVTLENILLTALPSS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacctctgccgagcagatgcagcttcttcgtgcagaagaaaaaccgcttctgt
aagatggtccccggaaaggggcggagcttctgcggagagcacgcgaccatggtgagccac
gtggactcagtagctacttcccaaaaagatcttatctgaatcagtgccctgatcagcagt
gaggtcattaaagctgtgacgtgttccctgtttcaggaggaggggttcggagactgcagg
aggatcacatgtccactggaccccaagcacaccgtggcccaacagaacctggagaagcac
ctgaagaaatgcaactctagagagaaaccccgacctgtctactatgtggagaacatcaat
gcaggacgagtcgatagagatcaggagtttccagaggtgtctctggctgagcgcagcaga
gcagatctggagtctctggtggaaaaactgaaggcagctactgaaggtcttcagcaggac
atggaggacaggacgctgtcccatcccgtcctccaggaagaactctctgacccaaagaat
ggaggctccgcccacaaacacctgaagcaacaggcctccctcctaggtcacctgcaggag
atgggtctcctcagcagggggcgctgctttgtggagttcggcgccggccggggaaagctg
tcccactggatccaccgggccctgcagaaacctgagggtcagggggtcgccatggaaacc
agccaggacctccagctgctgctggtggagcgctgcagcacccgcttcaaagtggatggg
aagcaccagggttctgccgacccgtttgagcggctacaggtggacattcagcacctggac
ctgagtaaagttccggtgctgagggagaaagcgctgccgttggtgggagtcgggaagcat
ctctgcggagcagccacagatctggccctgcgttgcctgctggacacagccagagcccag
tcagacacccagctgcttcccaagcacctcagagggccagagcctgggactggtaccggt
ccggttctgggcctggctgtggcgttatgctgccaccaccgctgtgagtggcgtcactac
gtgggtcagcagttcttcctccagagaggacttggacccgccgagttctccacgttctgc
cgcatgtccagctgggccacctgtggcccgccggccaatcacagcggagggaccagtcag
agcgggggggccagtcagagaggaggggccagtcagagcgggggggccagtcagagcgga
ggggccagtcagagaggaggggccagtcacagcggaggggccagtccaagcggagggacc
agtcagagcggaggggccagtcacagcgggggggccagtcagagcggaggggccagtcag
agcgggggggccagtcagagaggaggggccagtcacagcggaggggccagtcagagagga
ggggccagtcagagcgggggggccagtcagagtggaacggctgaggatcatgaagaagcg
gagcagctggcagtgctgagcaggttctggtcagcagcggagcgagagcatctgggtcgg
ctctgtaagctgatgatcgacagcggtaggcgggacttcctgcggaccagaggcttcagc
agccgtctaattggctacgcagatccagaggtgaccttggagaacatcctgctgaccgcc
ctgccctcgtcctga
DBGET
integrated database retrieval system
