Gambusia affinis (western mosquitofish): 122836264
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Entry
122836264 CDS
T07758
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122836264 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122836264 (edc4)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122836264 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
122836264 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_Prp19
Beta-prop_EDC4L
WDR55
SYCP2_ARLD
Motif
Other DBs
NCBI-GeneID:
122836264
NCBI-ProteinID:
XP_043982028
LinkDB
All DBs
Position
LG08:complement(2203410..2233652)
Genome browser
AA seq
1384 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRAGSSADMQPSEDQRKLSFNGELNGLLGAGLLGSSIS
ESTRPISTDCSVQECQRICLTGDDGSTCVPIVLNNVEIVASQDSGINSKARGSNKVKIQP
VAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSLDFSERSLLKGFTGAVTDLS
FAHLDSSLLGCVDEAGNLMVWHLTLTRSKILDQIVVHIQRPEDAPLNSHRRLIWCPYILE
DSEENQDDTSQTLALLHEDGAEVWDLEVLRANNSSWPVDASEIKDGLIIVKGHTQRVSEG
ALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHEGRPLSCLLFCDNHKRQDP
EVPFWRFLITGADQNQELKLWCTVSWTCLQTIKFSPDPFNSNVLPSLKASLDLAAEYLIL
TDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVSHSRLRHTEVLPAEEE
SESISTEGTQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNVGFNTSDFLPRSDSQDGFA
GFPDHLTDQSSDKDSGSGSQSDLRKIPSLPVPSDFLSNSGPSGGPMPKLMTPDAFMTPST
SVPASPGSSASSLTIVTAISSNSDSTNRTMDDVSQSPIRGENNGGSSLGLSVATSSPRAA
PAVLLPGLENLQALASSSGPLGLDSPQVPDSPLLPPLASPSRARSPDVISSASTVMSQDM
PEIATQTLQLQRGHGLEALQLPALQTDSMASAACALHLLTSPRTTTNNGLLPLELGGAEG
SPMADDSESRLGNKPSLLENTSQENAGVSGGSSDGSVSHTSWPAAPDITRETRNSLRDNG
LGECLREESSERRLSSPYHRRSFHLPQNDSQDVGADQSDPDDEIASLASSSGNCGSRSSH
RMPVKEWKSSPRASPKLKRKLKKDDGDSSQSRHMDHSQFNTETQDELLMLLRSQQRDLTD
LCSLVETMPGTIMAQVEHVLMKHQEQEQRRLDRALAENQSRQQQLHEQLSQQLSHALSTT
LTNRMDKVLREELKKAVPQTISKTLEPVTGQLNNSIAAKMAAVEVTIKDIVIKVVKSKNT
TDAMGRAAAEAMQGPIQAAYKDVFQSTVLPVFERGCQSMFQQINDSFKQGTQDYIQQLEA
HLKSRKQREQEARDPVIGQLQQTIDGFQSCTDQLASSVSAAVRAEVQHQMQAVVGNLQES
ILSHLQRIVKGEVSLAMREQQAVVTSSIMQAMRSAAGTPVPTAHLDYQSQQANILQLLQQ
GQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLATRSQ
LKISYLEDAVMNLDHSEPLTRDHMSSVLAQVRSKLLAFLQQDPHSPLSKRARGLLLMLHG
VVNH
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaacatagacatcgagggagcgacccagcacctccgggacatcctg
aagctcgaccgtgcgggcagcagcgccgatatgcaaccaagcgaagatcagagaaaactg
tccttcaatggagagctgaatggtctactgggagcaggactactggggagcagcatatca
gaatccaccagacccatttccacggactgcagcgtccaggagtgccagaggatctgcttg
actggtgatgatgggagcacctgcgtccccatcgtcttaaacaacgtggagattgtggcg
agccaggactcgggcatcaacagcaaggctcggggcagcaacaaggttaaaattcaacct
gtcgccaagtacgactgggagcataagtattattatggccgactgatagccgtgtccaac
tccttccttgcctacgccatcagaggagccaacaaccacgctatgattcgcgtgctgagt
ttggacttcagcgagcgctccttgctgaagggcttcaccggtgccgtcacggatctctct
ttcgcccaccttgactcttctctgttgggctgcgtggatgaggcgggaaacctgatggtc
tggcatctcacgctcacaagaagcaaaatactagatcagatagtggttcatattcagcgt
ccagaagacgctccactgaactcccacagacgcctcatctggtgcccgtacatcctggaa
gacagcgaggagaaccaggatgacaccagccagacactggctctcctgcacgaggacggg
gctgaggtttgggaccttgaagttttgagagccaataacagcagttggccagttgatgcc
tcagaaatcaaagacggcctcattattgtcaaaggacacacacagagagtcagtgaaggt
gctctgtccccggatgggaccgttttggccacagcgagccacgacggttacatcaagttc
tggcagatctacatagaaggaggacaagataagcccagatgtctccatgaactccgacct
cacgaaggacgtccgctctcctgtcttctcttctgtgacaaccacaaacggcaggatcca
gaggttccattctggaggtttctgataactggagcagaccagaaccaggagttgaagctg
tggtgcacagtttcctggacctgcttgcagaccatcaagttttctccagatccattcaac
tctaatgttcttcccagtctcaaggccagtttagatcttgctgctgaatacttgatcctc
actgatgtccaaagaaaggtcctctatgtgatggagctgcggcaggacctggagaagggc
aaagcgagcttcacggccgtgtcggagttcctgctgacccaccctgtgctcagcttcggg
gtgcgtgacgtgagccacagccgcctgaggcacaccgaggttctgccggcggaggaggag
agcgagagcatatcgacagagggcacccaaggacctgcagagtccaaatctgggatccaa
attaaactctactgtgttcacacaaagagtttgcaggacgtccagatctggtttcaaccc
aacgtggggttcaatacttcagattttcttccccgctctgactcccaagatggttttgct
gggtttccagaccacctcaccgaccagagctccgacaaagattctggaagcggctcgcag
tccgaccttaggaagatcccctcacttcctgttccctctgacttcctgtctaactctgga
ccatcaggcgggccgatgcccaagctgatgactcccgacgccttcatgacaccaagcact
tcggttcctgcgtctcctggcagcagcgccagcagtctgactattgttacagccatcagc
agcaactctgactcaacaaatagaaccatggacgatgtcagtcagagtcccatcagagga
gaaaacaatggcggcagcagtttgggactctctgtcgccaccagcagtccgagggctgca
cctgcagttctgctgcctggactggagaatctgcaggctctggcctcctccagtggccct
ctgggcctcgactcgcctcaggtcccagattctcctctcctgccgccgctggcctcgccg
agccgggcccgctccccagacgtcatctcctccgcctccaccgtgatgtcgcaggacatg
ccggagatcgcgacgcagacgctgcagctgcagcgcggccacggcctggaagccctgcag
cttcctgcgctgcagacggacagcatggcctctgctgcgtgtgctctgcacctcctgacg
tcaccgcgcaccaccaccaacaacggtttgttgccccttgaactcggaggtgctgagggg
tcgccgatggcagacgattcggagtccaggctcggtaacaaaccgtctcttctggagaac
acgtcgcaggaaaacgctggggtcagcggagggtcatcagatggcagcgttagccacacg
tcatggccagcagctccagacattaccagggaaaccaggaacagcctcagggacaacggg
ctgggagaatgtttgagagaggagtcaagcgagcgccgcttgagctctccctaccaccgg
cgctccttccacctcccccagaacgacagtcaggatgtcggcgctgaccagagcgatcct
gatgacgagatcgccagcctggcttcgtcctctgggaactgcggctctcgctcctctcac
aggatgccggtgaaagaatggaagagctctccacgagcctcgccaaaactgaagaggaaa
ctcaagaaagatgacggtgactcttctcagtccaggcacatggatcacagtcagtttaac
acagagactcaggatgagctcctgatgcttctgcgcagccagcagagggacctgacggat
ctgtgctctctggtggagaccatgccaggaaccatcatggcgcaggtggagcacgttctg
atgaaacaccaggagcaggaacagcgcagactggaccgagctctggccgagaaccagagc
cgccagcaacagcttcacgagcagctgagccagcagctgagccacgccctcagcacgacg
ctgaccaacaggatggacaaagtcctgagagaggagctaaagaaagcagttcctcaaacc
atttctaagactctggagccggtgacggggcagctgaacaactcgatcgccgctaagatg
gccgccgtggaggtcacgattaaggatattgtcatcaaagtggtcaaatccaagaacact
acagacgccatgggccgggccgcggcggaggccatgcagggccccatccaggccgcctac
aaagacgtcttccagagcacagtgctgccagtgtttgaacgaggctgccagtccatgttc
cagcagatcaacgacagcttcaaacaaggaacgcaggactacatccagcagctggaggcc
cacctgaagagccggaagcagagggagcaggaggcgcgggaccccgtgatcggccagctg
cagcagacgatcgacggcttccagagctgcacagatcagctggccagcagcgtctctgcc
gccgtacgagccgaggtccagcaccagatgcaggcggtggtggggaatctgcaggaatcc
atcctgagccacttgcagcgcatcgtgaaaggcgaggtgagcctggcgatgagggagcag
caggccgtcgtcacctccagcatcatgcaggccatgcgctccgccgccgggacgcccgtc
cccaccgcacacctggactaccagtcgcagcaggccaacatcctgcagctgctccagcag
ggccagctcaaccaggccttccagcaggctctgtctgcgacggacctgaacctggttctg
tacgtgtgcgagaccatcgactcccagcaggtgttcggccagacgccatgccccctgagc
cagccggtgctgctgtcgctgatccagcagctgtcctccaacctcgccacgcgctcccag
ctcaagatcagctacctggaggacgcagtgatgaatctggaccacagtgaaccgctgacc
agggaccacatgtcgtcggttctggcccaggtccgatccaaactgctggccttcctgcag
caggacccgcacagcccgctcagcaagcgggcgcgcggcctgctcctgatgctgcatgga
gtcgtcaaccactag
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integrated database retrieval system
