Gambusia affinis (western mosquitofish): 122836600
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Entry
122836600 CDS
T07758
Symbol
si:ch73-233f7.1
Name
(RefSeq) putative protocadherin beta-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gaf04515
]
122836600 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
gaf04515
]
Cadherins
Protocadherins
122836600 (si:ch73-233f7.1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
DUF5558
Motif
Other DBs
NCBI-GeneID:
122836600
NCBI-ProteinID:
XP_043982172
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Position
LG09:14245512..14253580
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AA seq
1020 aa
AA seq
DB search
MERTLCRGCWVPVTGLVICLLLCACVVDLVLAQIRYSIPEELDHGAFVGNIAEDLGLDVA
RLSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREELCERSPSCFLHLQVVIENPLELY
RVEVEILDVNDNSPSFPWTEFNLDITESAAPGSRFPLESAQDQDVGTNSLRSYQLSANQH
FVLNIQTRNDGSKFAELVLDTPLDREQQKRHEMVLTAFDGGSPERSGTALITITVLDAND
NVPVFDRSVYRASLVENAPRGTLVLKLNATDLDEGSNGEVTYAFSGHAPLKVRELFSVDP
YMGEIRVKGVVDYEKASVYELYVQAKDRGPSAVAVHSKVLVDILDVNDNAPEVILTSVST
PVQEDASPGTVIAVISVMDRDSGENGNVDCQIPNNVPFQLHSSFKNYYTLVTSEPLDRET
VSEFNITLTARDLGSPSLSTRRTILVQVSDINDNPPRFSQPSYTVYVTENNAPGASICSV
SAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQILVQA
QDAGFPPLASNVTVNVFVLDQNDNAPVIVSPLPKNGSVATEVVPRSVDAGYLVTKITALD
ADAGQNSRLSYQVIQATDPGLFSVALYTGEIRTIRRLVEEDATRQRLVILIKDNGQPPLS
ATASIVLTVVDSVPESLSDFGDLTLSPKPPSNLALYLIVSLSTISLIFLVAIIVLAAVKC
YKDRETHSGYNLPPLACCCCGGFQPEPPPEVFKKSNLNLQISSSSKVPTNCMEVNGNSSF
SQSYCYKACLTPESAKSDFMFLKPCSPSSTPRNNEAKNADNSWNAHSRSASVNNGATTPN
ELKQPNTDWTLTKTQNSSIKSYNSINMDGTLMRKAMHADPENYVTSMAPGQYWTWGTQMK
GMKDYKMSPSASGIPSRPWTPRCTPPPQQQQQQQQPSIPSHPHPHPHPHPHPHPHPHPPP
DYHHNVYIPGTPSGFCTLRPTAQRSELDVHNSFSTFGKKRRLQMSPQGEAAVINNDLYND
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtacactctgcagaggctgctgggttccggtgactggtctggtcatatgtctg
ctgctgtgtgcgtgtgtggtggacctggtacttgcacagattcggtactccatccccgag
gagctggatcacggggcatttgtgggcaacatcgcagaagacctgggtctggatgtggcc
aggctctcagcgcgaaggtttcgcatcgtctccggcgccaagaaacagtatttagaagtg
aacttggagaatggaatcctctttgttaacgaaaagatagacagagaggagctgtgtgaa
agaagcccaagctgttttctacacctacaagttgtcattgaaaacccgttagaactgtac
agagtggaagtggagattttagatgtcaacgacaactcccccagcttcccgtggactgag
ttcaatctcgacatcacagagtctgctgcgcccggctcacgcttccctttagagagcgca
caggaccaggacgtgggcaccaactctctgcgctcctaccagctgagcgcaaaccagcac
tttgtgctcaacatccagacgcgcaatgacggcagcaagtttgccgagctggtgctggat
acgccgcttgacagggagcagcaaaaaaggcacgaaatggttcttactgcttttgatgga
ggttcacctgaacgctctgggacagcgctaataacgatcactgtgttagatgccaacgat
aacgtgcctgtctttgaccgctcggtttatagggcgagcttggtggaaaacgcacccagg
ggaacgctggtgctgaagttaaacgccacagacttggacgaaggctcgaatggggaagtc
acatacgcgtttagcgggcacgcacctcttaaggtgcgtgaattgttcagcgtggacccc
tatatgggggagatacgtgtgaagggcgttgtggactacgagaaagccagtgtgtatgaa
ctgtacgttcaagcaaaagacagaggaccgtcggctgtggcagtacacagtaaggtactg
gtggacatcctggatgtgaatgacaacgcccccgaagttatcctcacatcagtgtccaca
cctgtccaggaggacgcgtcgcctggcacagtaatagctgtgatcagcgtcatggaccga
gattcgggagagaacgggaacgtggactgtcagattccgaataatgtcccctttcagctc
cactcatcttttaaaaactattacacgctggtgacaagcgagccgctggacagagagact
gtgtctgagttcaacatcacacttacagccagagacttgggctccccttcactctctacc
aggagaacaattctagttcaagtgtctgacataaacgacaaccccccgcggttctctcaa
ccttcatacacagtttatgtgaccgagaataacgcccccggcgcttccatttgctctgtc
tctgcattcgacccagattctaaccagaacgcatatctgtcttattccattctggagggt
caaattcagggcatgcccgtgtccacttatgtctccatcaactccgacaacggcaacata
tacgcactgcgctctttcgattatgagcaacttcgaaactttcagattctggtacaggcg
caggacgctggcttcccccctctcgccagcaatgtcacggtcaacgtgtttgttctggac
cagaatgacaacgcgcctgtcattgtgtccccgctgcccaagaacggctctgttgccacg
gaggtggttccgcgctctgtggacgcggggtatttggttaccaaaatcacagcgttagac
gcagacgcagggcaaaactcccggctgtcttaccaggttattcaggcgactgatccgggc
ttattcagcgtggctctatatacgggcgaaatcaggaccattcgccgattagtggaggaa
gacgcaacaagacaaagattagtaatattgatcaaggacaacggacagccgccgctctct
gccacagcctctattgtcctcacagttgtagacagcgtgcctgagtcgctgtcagatttc
ggagatctaacactcagcccgaaacccccctcaaaccttgccttgtatctcatcgtgtca
ctcagcacaatatctttaatattcctggtggccatcatcgtgctggctgctgttaagtgc
tacaaggaccgggagacccacagcggttacaacctgccccccttagcctgctgctgctgc
ggggggtttcagccagagccgcccccggaggtgttcaaaaaatcaaacctcaacttgcag
atttcatcctcgtccaaagtacccacgaactgcatggaggtgaatggaaatagcagtttt
tctcagtcatattgttataaagcctgtctgacccccgaatcagccaaaagtgactttatg
tttctgaagccgtgcagcccgagcagcacgccgaggaacaacgaggcgaagaacgcggac
aactcgtggaacgcgcacagccggagcgcatctgtgaacaacggagctacaactccgaac
gagctgaagcagccaaacacagactggactctcacgaagacccagaactcttccatcaaa
agttacaactctatcaatatggatggcacacttatgcgtaaggcaatgcatgcagaccca
gagaactatgtcacttcaatggcacctggacaatactggacttggggaactcaaatgaag
ggcatgaaagactacaaaatgtctccatcagctagtgggattccttctcggccctggact
cctcgatgcacgcctcctccacaacagcagcagcagcagcagcagccatcgattccctca
catccgcacccacatccacatccacatccacatccacatccacacccacacccaccacct
gactatcaccacaatgtgtacattcccggaactccgtcaggcttctgcaccctgcggcca
acagcgcagcgaagtgaactggacgtccacaattctttctccacgtttggcaagaaacgg
cgtcttcagatgtctccgcaaggggaagccgcggtgataaataatgatctgtacaatgac
tga
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