Gambusia affinis (western mosquitofish): 122836751
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Entry
122836751 CDS
T07758
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03020
RNA polymerase
gaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122836751 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
122836751 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gaf03021
]
122836751 (polr2b)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122836751 (polr2b)
Enzymes [BR:
gaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122836751 (polr2b)
Transcription machinery [BR:
gaf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122836751 (polr2b)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122836751 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
122836751
NCBI-ProteinID:
XP_043982527
LinkDB
All DBs
Position
LG09:29791142..29798145
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcagtacgatgaagatgatgatgaaatcactcctgat
ctgtggcaggaagcctgttggatcgtcatcagctcttactttgacgagaagggcctggtg
cggcagcagctggactcgttcgatgagttcatccagatgtcggtccagcggatcgtggag
gacgctccgcccatcgacctgcaggccgaggcacagcacacctcaggggaggtggaggag
ccgccgcgctacctactgaagttcgagcagatctacctgtctaagccgacccactgggag
cgggacggcgctccgtcccccatgatgcccaacgaggcccggctccggaacctgacgtac
tcggcgccgctgtacgtcgacatcactaagacgatcatcaaggagggggaggagcagctg
cagacgcagcatcagaagacattcatcgggaaaattcccatcatgctccgctccacctac
tgcctgctgagcggcctgactgaccgcgacctgtgcgagctcaacgagtgtccgctggac
ccaggcggctacttcatcatcaacggctccgagaaggttctgatcgcgcaggagaaaatg
gccaccaacacggtttacgtcttcgccaagaaggattcgaagtacgcgtacacaggcgag
tgccggtcctgcctggagaactcatcccggcccaccagcaccatctgggtcagcatgatg
gcccgcggaggacagggggtgaagaagagcgccatcgggcaacgcatcgtgtccacgctg
ccgtacatcagacaggaagtgcccatcatcatcgtgttccgggcgctgggcttcgtgtcc
gacagagacatcctggagcacatcatctacgacttcgacgacccggagatgatggagatg
gtgaagccgtcgctggacgaggcctttgtgatccaggagcagaacgtggcgctgaatttc
atcgggtccagaggcgccaagcccggcgtgacaaaggagcggcgcatcaagtacgccaag
gaagtcctgcagaaggagatgctgccgcacgtcggcgtcagcgacttctgcgagaccaag
aaggcctacttcctggggtacatggtccaccggctgctcctcgcggctctgggccggcgg
gagctggacgacagggatcactatggcaacaagaggctggacctggctggaccgctgctg
gccttcctgttcagggggatgttcaagaacctcctgaaggagatccggatctacgcccag
aagttcatcgaccgagggaaggacttcaacctggagctggccatcaagacgcggatcatc
tccgacggactcaagtactccctggccaccggcaactggggcgacgtcaagaaggcccac
caggcccgcgccggcgtgtcccaggtgttgaaccggctcaccttcgcctccacgctgtcc
cacctgcgccgggtcaactcccccatcggccgcgacggcaagctggccaagccgaggcag
ctgcacaacacgctgtggggcatggtgtgtcccgccgagacgcctgagggccacgccgtg
ggtctggtgaagaacctggccctcatggcctacatctcggtcggctcgcagccgtctccc
atcctggagttcctggaggagtggagcatggagaacctggaggagatttccccggctgcc
attgccgacgctacaaaaatctttgtgaacggctgctgggtggggatccacaaagacccg
gagcagctgatgaacacgctgaggaagctccgcaggcagatggacatcatcgtgtcagag
gtgtcgatgatccgagacatccgggagcgggagatccggatctacacggacgccgggcgg
atttgccgaccgctgctgatcgtggagaagcagaagctgctgctgaagagacggcacatc
gaccagctgaaggagcgagagtacaacaactacagctggcaggacctggtggcgagtggc
gtggtggagtacatcgacaccctggaggaggaaaccgtcatgctcgccatgacccctgat
gacctccaggagaagggcgtggcctactgctccacctacacccactgtgagatccacccg
tccatgatcctgggagtctgcgcctccatcatcccgttccccgaccacaaccagtctccc
aggaacacgtaccagtccgccatggggaagcaggccatgggcgtctacatcaccaacttc
cacgtgaggatggacacgctggcccacgtgctgtactacccccagaagccgctggtcacc
acgcgctccatggagtacctgcgcttccgggagctgccagcaggaatcaactccatcgtc
gccatcgcctcctacacgggctacaaccaggaggactcggtcatcatgaaccgctcagct
gtggaccgcggcttcttcaggtccgttttctaccggtcctacaaggagcaggagtccaag
aagggcttcgaccaggaggaaatctttgagaagccgacccgcgagacgtgtcaggggatg
aggcacgccatctacgacaagctggacgacgacgggctgatcgcgcccggcgtccgtgtg
tccggggaagacgtgatcatcgggaagacggtgacgctgccggagaacgaggacgagctg
gacagcaccaaccgccgctacaccaagagggactgcagcaccttcctgcggaccagcgag
accggcatcgtggaccaggtcatggtgacgctcaaccaggagggatacaagttctgcaag
atccgggtccgttcagtccggatccctcagattggagacaagttcgccagccgccacggg
cagaagggaacctgcgggatccagtaccgacaggaggacatgccgttcacctgtgaaggc
atcacacctgacatcatcatcaaccctcacgccatcccgtccagaatgacagtcggccat
cttatcgaatgtctgcaggggaaggtgtcggctaacaaaggtgagattggcgacgccacg
cctttcaacgacgccgtcaacgtgcagaaagtgtccaaccttctgtccgagtatgggtac
cacctgagaggaaacgaggttctgtacaacggcttcacggggaggaagttgacgtcccag
atcttcatcgggccgacctactaccagcggctgaagcacatggtggacgataagatccac
tcccgggcccgcgggccggtccagatcctgaaccgccagccgatggagggccgctcccgt
gacggcgggctgcgtttcggggagatggagcgggactgccagatcgcccacggcgccgcc
cagttcctccgggagcgtctgtttgaggcgtccgacccgtaccaggtccacgtctgcaac
ctgtgcggcctgatggccatcgccaacacaaggacgcacacctacgagtgtcggggttgc
cgcaacaagacgcagatctctctggtccggatgccgtacgcctgcaagctgttgttccag
gaactgatgtccatgagcatcgctcctcgaatgatgacctcatag
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