Gambusia affinis (western mosquitofish): 122836752
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Entry
122836752 CDS
T07758
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04010
MAPK signaling pathway
gaf04210
Apoptosis
gaf04218
Cellular senescence
gaf04519
Cadherin signaling
gaf04620
Toll-like receptor signaling pathway
gaf04621
NOD-like receptor signaling pathway
gaf04622
RIG-I-like receptor signaling pathway
gaf04623
Cytosolic DNA-sensing pathway
gaf04625
C-type lectin receptor signaling pathway
gaf04920
Adipocytokine signaling pathway
gaf05132
Salmonella infection
gaf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122836752 (nfkb1)
09133 Signaling molecules and interaction
04519 Cadherin signaling
122836752 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
122836752 (nfkb1)
04218 Cellular senescence
122836752 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122836752 (nfkb1)
04621 NOD-like receptor signaling pathway
122836752 (nfkb1)
04622 RIG-I-like receptor signaling pathway
122836752 (nfkb1)
04623 Cytosolic DNA-sensing pathway
122836752 (nfkb1)
04625 C-type lectin receptor signaling pathway
122836752 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
122836752 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122836752 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
122836752 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122836752 (nfkb1)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
122836752 (nfkb1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_5
Ank_3
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
122836752
NCBI-ProteinID:
XP_043982528
LinkDB
All DBs
Position
LG09:29759175..29780613
Genome browser
AA seq
919 aa
AA seq
DB search
MAADENYLHASSQMFDTTMMDPSFLEYSHFVPIPQMTALQSVDGPFLQILEQPKQRGFRF
RYGCEGPSHGGLPGASSEKNRKTYPTVKICNYQGQARVVVQLVTALTQLPQLHAHSLVGK
QCDKGICIADLQSKDSTISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVAIHPEID
ALQGEVRLPRELSDHQRSLISSAAATQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVS
EPIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEA
LGDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDK
EEVQRKRQKTLPNFQDFSGHGGGGGGGLYRGGGGGGGGPASGVGGPGPAGGGYYQGFSSY
SYGGAGGGFSSAYSAGLGGGGGTKHALQSEAADDSDDDSDPDNDPASGAVLRGSAQSQVS
GVDPRRSGSDVSADEVLMEATRRQLDALFRYSVTGDSAYLLAPQRPLMAAQDEDGDTGLH
LAVLHSQQEALTSLTQVVSALTGEEVLNMRNHLYQTPLHLAVITQQKQAAEVLLMAGADP
TLTDRHGNTVLHLAAQQEGDGMVELLLRRREMRELLQFSNTAGLCAIHLAVLANRLAALR
ELLVGGADVEAQERSGGRTALHLATETDNVSLAGCLLLEGNAKVDSCTFNGSTPLHVAAG
RGSLKLTALLMAAGADPHRENFEPLFIRDEEDEEEQDDEGYISGTTPVNMAACPEVLDLL
NGQEYEPRSQRAFVPPQGDLSVLDMQVKRAVCGALEAEGCWENLAHHLGLGILNTAFRLS
PNPARTLLESYEVSGGTVSDLLVALRSAGGCRALSILEGALCQNPDTAEEVQNPPVQNLK
ADLGNDSGVCDSGVELSTA
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgatgagaactacctgcacgcctccagccagatgttcgacaccaccatgatg
gacccgtccttcctggagtattcccacttcgtcccgatccctcagatgacggctctgcag
tcagtggacggaccgttcctgcagatcctagagcagcccaaacagcgcggcttcagattc
cgctacggctgtgaaggtccgtcgcacggcggcctgccaggagcctccagcgagaagaac
aggaagacgtacccgacggtgaagatctgtaactaccagggtcaggcccgggtcgtggtc
cagctggtgacggcgctgacccagctgccgcagcttcacgctcacagcctggtggggaag
cagtgcgataaagggatctgcatcgctgacctgcagtccaaagactccaccatcagtttt
cccaacctgggaatcctccatgtgaccaagaagaacgtggcgaagacactggaggagcgg
atggtggaggccttcaggatgggctacaactgtggggtcgccatccacccggagatcgac
gcgctgcagggggaggtccggctcccgcgggagctcagcgaccaccagcgcagcctgatc
agcagcgccgcagccactcaggccaaagagatggacctgagcgtggtgcgcctcatgttc
accgccttcctgcccgacagcgacggcggcttctccagacgcctggagcccgtggtgtcc
gagcccatctacgacagcaaggctccaaacgcctcaaacctgaagatcgtcaggatggac
cggaccgccggctgcgtgacggggggagaggaggtctacctgctctgtgacaaggtccag
aaagatgacatccaggtgcggttctatgaggaggacgactcgggcctgacctgggaggct
ctgggcgatttctcccccacagatgtccacagacagtttgccatcgtcttcaagaccccg
aagtatcgagaccaaaacctgcagaagccgacgtctgtcttcgtccagctaaagaggaaa
tccgacaacgagaccagcgaacccaaaccattcacctaccatccgcagatcatagataaa
gaggaggttcagagaaaaaggcagaagacgttgccaaacttccaggacttcagcggacat
ggaggaggaggaggcggagggctgtaccgaggtggaggaggaggaggaggaggtccagct
tcaggagttggaggtccaggcccggcaggaggaggatattaccagggtttctcctcctac
agctacggaggagcaggaggaggattctcctcagcgtactcagctggtcttggaggaggc
ggcggcacaaagcatgctttgcagagtgaagctgcagacgacagcgacgacgacagtgac
ccagacaacgacccggcatcgggcgctgtgctaagaggctccgcccagtcccaagtctcc
ggtgtggatccacgtcgctctggttctgatgtgtctgcagacgaggttctgatggaggcg
acccgcaggcagctcgacgctctcttccgatactcagtcaccggcgactcggcgtacctg
ctggctccacagcgccccctgatggcggcacaggatgaagacggagacactgggctgcat
ctggcggtgctgcacagccagcaggaggcgctgacaagtctgacccaggttgtgtccgct
ctgacgggagaggaggtgctcaacatgaggaaccacctgtaccagactcctctgcacctg
gcggtcatcactcagcagaagcaggcggccgaagtgctgctgatggctggcgctgacccg
actctgacagatcgccacggcaacacggttcttcacctggcggcacagcaggaaggagac
gggatggtggaacttttactgcggcgcagagagatgagagagctgctgcagttcagcaac
acagcaggtctgtgtgccatccacctggcggttctggccaatcggctggcggcgctcagg
gagctgctggtgggcggggccgatgtggaggctcaggagcgcagcggcggacgcaccgcg
ctgcacctcgccacggagaccgacaacgtgtcgctggccggctgtctgctgctggaggga
aacgccaaggtggacagctgcaccttcaacggctccacccccctgcacgtggccgcgggg
cggggctccctcaagctgacggctttgctgatggctgcaggtgccgacccgcacagggag
aactttgagccgctcttcatcagggacgaggaagatgaggaggagcaggatgatgaaggc
tacatttcaggaaccactccagttaacatggctgcctgccctgaggttctggatcttcta
aacggtcaggagtacgagcccaggagccagcgagccttcgtccccccacagggtgacctg
tcagttctagacatgcaggtaaagcgagccgtgtgcggcgctctggaggctgaagggtgc
tgggagaacctggctcaccacctgggcctcggcatcctgaacacggcattccggctgagt
ccaaacccggccagaaccctgctggagagctatgaggtttctggtggaaccgtttcggac
ctgctggtggctctccggtcggcaggcggctgcagagcgctgagcatcctggagggggcg
ctgtgccagaacccggacactgcagaggaggtccagaaccctccggtccagaacctgaag
gcggaccttgggaatgacagcggcgtctgcgacagcggggtggagctctccacagcgtag
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