Gambusia affinis (western mosquitofish): 122836776
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Entry
122836776 CDS
T07758
Symbol
abca1b
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf02010
ABC transporters
gaf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
122836776 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122836776 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
gaf02000
]
122836776 (abca1b)
Transporters [BR:
gaf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
122836776 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
122836776
NCBI-ProteinID:
XP_043982566
LinkDB
All DBs
Position
LG09:complement(29937283..29967799)
Genome browser
AA seq
2281 aa
AA seq
DB search
MSVFTQLGLLLWKNFTYRRRQTLQLLVEIIWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGILCNANNPCFRNPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDR
NLEGFKELARALEVLQSSRSGFKLKHFLRDNETLFSFLQRNASLSRHAALQIAEADVDLE
QVVLRGWGVHLRDMCPRGGGTADMKNFVAIGDQQVAAQVQEILCQAPPTWLDRAEQNFMS
NLDFFKPIRRDVRSDPEAVQKVAGAINNLLVSLGSLAVELAGMKSWVDLRNEIVFLTRNA
TASPSVLYKAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNGSEDAAAALYDNSST
PFCNSLVQNLDSNPMSRMIWQALKPLLLGKILYTPNTPATQRIIHEVNRTFQELAVFRDL
GGMWEEMRPKVLDFMENSQEMDVIRTLLKNNITASFFHAQLAGTDWTVADITNFLSKEPA
ELPGGALTWREVFNETDHAIMSISRFMECVNLDKLEPVSTEERLVNRSMVLLEDRKFWAG
IVFPDIGANATELPPKVNYKLRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFLY
LQDVIEQGIVRALTGIKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVSII
LKSVVYEKEARLKETMRIMGLDNGILWLSWFISSLVPLLISAALLVLVLKKGNLLPYSDP
GIIFVFLGSYAVVTIMQCFLISTVFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGV
KVFASLLSPVTFGFGCEYFALFEEQGVGIQWKNLVSSPLQEDEFSLRTTIIMMYFDSFLY
GVLTWYIEAVFPGQYGIPRPWYFPFSKSYWFGEEGKSNKLPLNRKGNAAAVCVEEEPAHL
EPGVYIENLVKVYRHGMKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRTDLSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVSAEIEHI
LQDTGLPHKRRSRTSTLSGGMQRKLSVALAFVGGAKVVILDEPTAGVDPYARRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKTQLGTGYYLTLVKKEAE
PSLSSCRNSSSSVSFTKKDEESASVSSSDAGLGSEHESEAAAIDHAAAMCTPPDSSSVSG
LILRHVPAARLVEDLGHELTYVLPYSAAKDGAFVALFRELDLKLQELGVSSYGVSDTTLE
EIFLKVAEDNGVDTEVPSDGTLPVWRRRKTHAFGGGDHQSCLRPNTEDDNDCNDSDGDAD
CRETDWLGGAEGKGSVQVTGWSLKRQQFVALMWKRFLYARRSRKGFFAQVVLPAVFVCIA
LVFSLIVPPFGKYPSLELQPWMYEEQVTFFSDDAPGDANMQKLLSALLDPPGFGTRCMDG
YSIREAPCTMGDDDWSTPPVPDAVKQLFSSRNWTMEHPSPACSCTCDGRKRMLPDCPAGA
GGLPPPEMKLSSSDTLQNLTGRNISDYLVKTYADIIGKSLKNKVWVNEFRYGGFSLGARS
TQVLPAANEVDDAIERVRKAFELQKGSAADRFLDNLSGFINGLDTKNNVKVXPEPGGPTG
GPTGVSSLLSSDLRANLPPGAEPGRYGITSFNHPLNLTKEQLSQVALVTTSVDVLVSICV
IFAMSFVPASFVVFLIQERVSKAKHMQFISGVHPLLYWLANFTWDMCNYCVPATLVILIF
ICFQQKAYVSSSNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGING
SISTFVMELFGDQEIGGINDILKNVLLVFPHFCLGRGLIDMVKNQAMADALERFGENRFR
SPLDWDMVGKNLFAMAVEGVVFFIITILIQYRFCIKPRPVSKLTKLGPLGEEDEDVARER
HRIVQGLGQGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKML
TGDTLVTSGEAFLAGKSVLREIEDVHRNMGYCPQFDAINELLTGREHLELYAVLRGVPEW
EVCDVAEWGIRKLSLLKYADKRAGSYSGGNLRKLSTAISLIGAPPVVFLDEPTTGMDPRA
RRALWNCIHSVIKEGRSIVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPDPDLRPVMKFIESELSGSTLKEKHRNMLQYQLPSSLSSLAHIFSTFANNKD
ALRIEDYSVTQTTLDQVFVNFAKDQSDDYLSKDESVRRKEVIVDVPAPSSACGGAEGESV
M
NT seq
6846 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgttcacacagctgggcctgctgctgtggaagaacttcacctacagacgccga
cagacgctccagctgctggtggagatcatctggccgctcttcatcttcttcatcctcatc
gctgtgcggctcaactaccccccctatgagcagcatgagtgtcacttccccaacaaggcc
atgccgtcggcgggaacgttgccgtggattcagggaatcctctgcaacgccaacaacccg
tgtttcaggaacccgacgccgggcgagtcgccgggcgtcgtcggaaacttcaacgactcc
ataatttcccgcctgttttccgatgccaagaagattttgctctacagccaaaacgaccga
aacctggagggcttcaaggagctggcccgggccctggaggttctgcagagcagccgctca
ggcttcaagctgaagcatttccttcgagacaacgagacgcttttcagcttcctgcagagg
aacgcctcgctgtcccgacacgccgccctgcagatcgccgaggccgacgtcgacctggag
caggtcgtcctcagaggctggggcgtccacctgagggacatgtgtccccgcggcggcggg
acggccgacatgaagaacttcgtcgccatcggagaccagcaggtggcggcgcaggtgcag
gaaatcctctgccaggctccgcccacctggctggaccgagccgagcagaacttcatgagc
aacctggacttcttcaaacccatccggagggacgtccggtcggacccggaagctgtccag
aaggtcgccggcgccatcaacaacctcctggtcagtctgggttctctggccgtcgagctg
gccgggatgaagagctgggtggacctgcggaacgagatcgtgttcctgacgcggaacgcc
acggcgtcgcccagcgtcctctacaaggccgtctccaggatcgtgtgcggccacccggag
ggcggcggcctgcagatcaaatccctcaactggtacgaagacagcaactacaaggctctg
ttcggcaaccacaacggcagcgaggacgccgccgccgcactctacgacaactcctccact
ccattttgcaacagcctggtccagaacttggactccaacccaatgtcccggatgatctgg
caggccctgaagcctctgctgttggggaagattctgtacaccccaaacaccccggcaacc
cagaggatcatccacgaggtgaaccggaccttccaggagcttgctgtgttcagggacctg
ggcggcatgtgggaggaaatgagacccaaagtgttggacttcatggagaacagccaggaa
atggatgtaatcaggactctgctgaagaacaacatcaccgccagcttcttccacgctcag
ctggccggcaccgattggaccgtggccgacatcaccaacttcctgtccaaggagccggca
gagctgcccggtggcgccctcacctggagggaggtgttcaatgagaccgaccacgccatc
atgagcatctctcgcttcatggagtgtgtgaacttggacaagctggagccagtgtccact
gaggagcggctcgtcaaccgctccatggttctgctggaggaccggaagttctgggccggg
attgttttccccgacatcggcgccaacgccaccgagctgccgccaaaggtcaactacaag
ctgcgcatggacatcgacaacgtggagcgaaccaacaagatcaaagacgcttactgggac
ccgggtcctcgggccgacccgtttgaggacatgcggtacatctggggcggattcttgtac
ctgcaggatgtcattgagcaaggcatcgtcagagcgctgaccggcatcaaggagaagact
ggcgtctacatccagcagatgccgtatccgtgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgccgctcttcatgacgctggcctggatgtactcggtgtccatcatc
ctgaagagcgtggtgtatgagaaggaggcgcggctgaaagagaccatgaggatcatgggc
ctggacaacggcatcctgtggctgagctggttcatcagcagcctggttccgctgctcatc
agcgccgcactgctggttctggttctgaagaaggggaacctgctgccctacagcgaccct
ggcatcatcttcgtcttcctgggatcgtacgccgtggtcacaatcatgcagtgcttcctc
atcagcacagtgtttgctcgcgccaacctggctgccgcctgcggaggcatcatctacttc
accctctacctgccctacgtcctctgcgttgcctggcaagactacatcggatacggagtc
aaagtgtttgctagcctgctgtcccccgtaacctttggcttcggctgtgagtactttgcg
ctgtttgaggagcagggagtcgggatccagtggaagaacctggtgtcgagtcctctacag
gaagacgagttcagcctccgcaccaccatcatcatgatgtactttgactccttcctgtac
ggagtcctcacctggtacatcgaggccgtgtttccaggtcagtacggtatccctcggccc
tggtacttccccttctccaagtcctactggtttggagaggaggggaagtccaacaagctt
ccactgaaccggaaaggaaacgcagcagctgtgtgtgtggaggaggagccggcccacttg
gagccgggagtctacatcgagaacctggtgaaggtttaccgtcacggaatgaaactggcc
gtagacggactgactctgggattctacgagggacaaatcacctcctttctgggacacaac
ggcgctggaaagaccaccacaatgtccatcctgaccggcctgttcccgccgacctccggc
accgcctacatcctggggaaggacatccggacagatctgagtgccatcaggcaaagcctg
ggcgtctgtcctcagcacaacgtcctcttcagcatgctgacggtggaggagcacatctgg
ttctacgcgcggctcaaaggactgtcagaggagcaggtgtcggctgagatcgagcacatc
ctgcaggacacggggctgcctcacaagcggcgctccaggaccagcacgctgtccggcggc
atgcagaggaagctgtcggtcgccctggccttcgtcggtggggccaaggtggtgatcctg
gatgagcccacggccggagtcgacccctacgcccgcagagggatctgggacctgctgctg
aagtaccggcagggccggaccatcatcctgtccacccaccacatggacgaggcggacatc
ctgggggaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggttcgtctctg
tacctcaagacgcagctggggacaggatactacctgacgctggtgaagaaggaggcggag
ccatcgctcagctcctgcaggaactcgtccagcagcgtgtccttcaccaagaaggacgag
gagagcgcctcggtcagcagcagcgacgccggactcggtagcgaacatgaaagtgaggca
gccgccatcgaccacgccgccgccatgtgcacgccgccagactcgtcctcggtatccggc
ctgatcctgcgccacgtcccggccgcccgcctggtggaggacctgggccacgagctgacc
tacgtcctgccatacagcgccgccaaggacggcgccttcgtagcgctcttcagagagctg
gacctgaagctgcaggagctgggcgtctccagctacggcgtgtccgacaccacactggag
gagattttcctgaaggtggctgaagataatggagtggacactgaagttccctcagatggg
acacttcctgtttggcggcgcaggaagactcacgccttcggaggcggcgaccatcagagc
tgcctgaggccgaacacggaggatgacaacgactgcaatgactccgatggagacgccgac
tgcagggagacggactggctgggcggcgctgaggggaaaggttcggtccaggtgacgggt
tggagcctgaagaggcagcagtttgtggcactgatgtggaagcgcttcctgtacgcccgg
cgctccaggaagggtttcttcgctcaggttgtccttccggccgtgttcgtctgcatcgcc
ctggtcttcagcctcatcgtccctccgttcgggaagtaccccagcctggagctgcagccc
tggatgtacgaggaacaggtgaccttcttcagcgatgacgctccaggggacgccaacatg
cagaagttactgagcgctctgttggatccaccgggcttcgggacgcgttgcatggacggg
tactccatccgggaggcgccctgcaccatgggggacgatgactggagcacccccccggtc
cctgacgccgtcaagcagctgttcagctccagaaactggaccatggagcatccgtcgccg
gcctgctcctgcacctgcgacggcaggaagaggatgctgccggactgcccagcgggagcc
ggcgggctgccgccgcctgagatgaagctgagcagctcagacactctgcagaacctgaca
ggacggaacatctcggactacctggtgaagacgtacgctgacatcatcgggaagagcctg
aagaacaaagtgtgggtcaacgagttcaggtacggaggcttctcattgggcgccaggagc
acacaggtccttcctgcagccaatgaggtcgacgacgccatcgagagagtccgaaaggcc
tttgagttacagaagggttctgctgctgaccggttcctggacaatctgtccggcttcatc
aacgggctggacaccaagaacaacgtgaaggtatgaccggaaccgggtggacctacaggt
ggacctacaggtgtgtcgtccttactgtcctcagatctgagagccaacctgccgccaggt
gcagagcctggtcgctatggcatcacttccttcaaccacccactcaacctgaccaaggag
cagctgtcccaggtggcgctggtaacgacctcggtggacgtcctggtgtccatctgcgtg
atcttcgccatgtccttcgtcccggccagcttcgtagtcttcctcatccaggagcgcgtc
agcaaagccaaacacatgcagttcatcagcggcgtgcatccgctgctctactggctggcc
aacttcacctgggacatgtgcaactactgcgtcccggcgacgctcgtcatcctcatcttc
atctgcttccagcagaaagcctacgtctcctccagcaacctgccagttctggcactgctg
ctgctgctctacggctggtccatcacgcccctcatgtatccggcctccttcttcttcaag
atccccagcacggcctacgtggtcctgaccagcgtcaacatcctcatcggcatcaacggc
agcatctccaccttcgtcatggagctgttcggcgaccaggagatcggcggcatcaacgac
atcctgaagaacgtcctgctggtcttccctcacttctgcctcggccgcggcctcatcgac
atggtcaagaaccaggcgatggccgacgccctcgagagattcggtgagaacaggttccgg
tcgcccctggactgggacatggtgggaaagaacctgttcgccatggcggtggagggcgtg
gtcttcttcatcatcaccatcctcatccagtacaggttctgcatcaagcccaggcccgtc
agtaaactcaccaaactgggaccactgggagaggaggacgaggacgtggctcgtgagaga
caccgcatcgtccagggcctggggcagggggacatcctggagctccggcagctcaccaag
gtcttcaagcggaagcagaagccggcggtggaccggctgtgtgtcgggattcctcctgga
gagtgcttcggtctgctcggtgtgaatggagctgggaaaaccacaaccttcaagatgctg
acaggagacaccctggtgaccagcggagaggctttcctggccggcaagagcgtcctgcgg
gagatcgaggacgtccaccggaacatgggctactgccctcagtttgacgccatcaacgag
ctgctgacgggacgggagcacctggagctgtacgccgtcctcagaggcgtcccggagtgg
gaggtctgcgacgtggcggagtggggcatcaggaagctgagtctgctgaaatacgccgat
aagagagcaggaagctacagcggaggaaacctgaggaagctgtccactgccatttctctg
atcggagcgccccctgtggtcttcctggacgagccgaccacagggatggaccccagggcc
cgacgggccctttggaactgcatccacagcgtcatcaaggagggccgctccatcgtcctc
acctcacacagcatggaggagtgtgaggctctctgcaccaggatggccatcatggtgaac
ggcaggttccgatgtctcggcagcgtccaacacctgaagaacaggttcggggacggctac
accatcatcctgcgggtggcggggcccgacccggacctgcgtcctgtcatgaagttcata
gagagcgagctgagcggcagcacgctgaaggagaagcatcgcaacatgctgcagtaccag
ctgccctcctcactctcctcgctcgcccacatcttctccaccttcgccaacaacaaggac
gcgctgcggatcgaggactactccgtcacccagaccaccttggaccaggtgtttgtgaac
tttgcgaaggaccagagtgacgactacctgtccaaagacgagtcggtgaggcggaaggaa
gtgatcgtggacgtcccggcgccgagctccgcctgtggcggtgcggagggcgagagcgtc
atgtga
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integrated database retrieval system
