Gambusia affinis (western mosquitofish): 122836954
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Entry
122836954 CDS
T07758
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122836954 (si:ch211-114c17.1)
Spliceosome [BR:
gaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122836954 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
HrpB1_HrpK
UTP6_C
TPR_11
TPR_16
TPR_12
HAT
Motif
Other DBs
NCBI-GeneID:
122836954
NCBI-ProteinID:
XP_043982899
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Position
LG09:complement(17040391..17047847)
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AA seq
726 aa
AA seq
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MAAESCEGMSGNGVPEESSAMDITEAPPPPPEASEENGGAAAAPEGPADPDNYSTALAAA
SEQGDLPADFERLWNAAHDNPQDFPSWTDLLQYCEHEGHAAAYRRALEAFLVRYPLCYGY
WKKFVDLERRGGDNNKAEEVCIRGLQAIPLSVDLWIHYINLLLGTLDMNLPDSAVRIRSV
FENGVASCGLDFHSDRLWDLYVEWEKEHGNVKNAAAVLDRALRVPTQLYSTHYDKFKAHL
NNNPPKDVLPSEEYEELRATCRQSQKAKRAEQAQEADEERPPGEEEPATPEGTDSEELMQ
KIRDQVLLRRDKVYQDNEGEVRKRWNYEDAIKRPYFHVRPLDRLQLRAWHTYLDWEIAEL
NKDTKESSQDPNQESTEESEITTQRQEASDDAPAFQGDHRVRILFERCLIACALYEEFWT
RYIQYLEPQSVEETRAVYRRACLVHLPNKPNIHMQWATFEERHGDLNEARRVLEALEKAR
PGLAVVRIRRAALERRAGRLDQSEALLREAVAESKERPTLHAFYSIKLARLLLKVARNPD
GARTVLQEALEISPDNDKLHLNLLDLESSAEPGASAEAVQECVTRALAAPLTPQTKLLLS
QRGLQFTEEYSNSIKSVLSVYEAHQKLLDELGGTKREAENGDEDPEKTSKTDDSSSSSAA
AAVAPPSSTSQVPITTPPPPVMAADPSAQTGYGAYSSWYQQPQYGGYGGYGYQNAWNYNQ
SYYPPS
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagagctgtgaagggatgagcggtaacggggtgcctgaagagtcttcagcc
atggatatcacggaggcacctccacctcctcctgaagcgtcggaggaaaatggcggtgca
gctgcggcccctgaaggtcctgcagacccagataattactccacagccctggcagcagcg
agcgaacagggggatctacctgcagactttgagcgtctgtggaatgccgcacatgacaat
cctcaggacttccccagctggaccgatctgctccagtactgtgagcatgagggtcatgct
gctgcgtaccgcagagcgctggaagcctttctggttcggtatcctctctgctacggctac
tggaaaaaatttgtcgacctggaacgtcgaggcggcgacaacaataaagcagaggaggtg
tgcattcgtggtcttcaagcaattcctctgagcgtagatctttggatccactacatcaat
ctgctgctgggaacgttggacatgaaccttcccgattcagctgttcggattcgcagtgtt
tttgagaacggcgtggcgtcatgcggtctggatttccactcggaccgcctgtgggatctc
tacgtggagtgggagaaggagcacggaaacgtgaagaacgcagcggccgtcctggaccga
gcgctcagagttcccactcagctctacagcacccactacgacaagttcaaagcgcatctt
aacaacaacccgcctaaagacgtgctcccctctgaggagtacgaggagctgagggcgacg
tgccggcagagccagaaggccaaacgggccgaacaggcccaggaggcggacgaggagagg
ccgccaggagaggaggagccagctacacccgagggtaccgactctgaggagctgatgcag
aagataagagaccaggttctgcttcgtagagacaaagtttaccaggacaacgagggagag
gtcaggaagagatggaactatgaagatgctatcaagcgtccatacttccacgttcggccg
ctggaccgcctgcagctccgagcctggcacacctacctggactgggagatcgctgagctg
aacaaagacaccaaggagtcctcacaagatccaaaccaggaatcgacggaggaatcagag
atcacaacgcagcgccaggaagcatcagatgatgctcccgccttccagggcgaccacaga
gttcgcatcctgtttgagcgctgcctgatcgcctgcgctctgtacgaggagttctggacc
aggtacatccagtacctggagccgcagagtgtggaggagacccgggccgtctacaggcga
gcctgcctggtccacctccccaacaagcccaacatccacatgcagtgggccacgtttgag
gagagacacggtgacctcaacgaggcccggcgggttctggaggccctggagaaagcccgg
cctggtctggctgtggttcgcatccgcagggcggccttagagcgccgagcgggccggctg
gaccagtcggaggctctgctgcgagaggcggtggctgaatccaaagagaggccgacgctg
cacgccttctactccatcaaactggcccgtctgctgctcaaagtggccagaaacccagac
ggcgcccgcacggttttacaggaagcgctggagattagtccggataacgacaagctgcac
ttgaacctgttggacctggagtcgtctgcggagccgggggcttcggccgaggcagtgcag
gagtgtgtgactcgggccctggcggctccgctcaccccacaaaccaagttacttctgtca
cagagaggcctccagttcacagaggagtacagcaactccattaagagcgtgctgtccgtc
tacgaggcgcatcagaagctgctggacgagctgggaggcacaaagagagaagcagaaaac
ggggacgaggatccagagaaaactagcaaaacagacgacagctcttcttcttctgctgct
gctgctgttgcgccgccatccagcacgtcacaggttcccatcaccacgccgccgcctcct
gtgatggccgccgacccgagtgcccagaccggatacggagcatacagcagctggtaccag
caaccgcagtacggcggctacggcggctacggctaccagaacgcctggaactacaaccag
tcctactatccacccagttaa
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