KEGG   Gambusia affinis (western mosquitofish): 122837047
Entry
122837047         CDS       T07758                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
gaf  Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gaf03041]
    122837047 (smu1a)
Spliceosome [BR:gaf03041]
 Complex B
  Other components
   Complex B specific factors
    122837047 (smu1a)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Ge1_WD40 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_VPS8 WD40_RFWD3 Beta-prop_WDR75_2nd Beta-prop_BBS7 Beta-prop_IP5PC_F Beta-prop_NOL10_N LisH LisH_PAC1 TFIIIC_delta LisH_WDR26 VPS8_N DUF7165 PA14
Other DBs
NCBI-GeneID: 122837047
NCBI-ProteinID: XP_043983048
LinkDB
Position
LG09:complement(25296214..25302869)
AA seq 540 aa
MSIEVESADVVRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVAEINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQVSNLETFKLALYT
QVADISQLLNFLLQSLKWQQHQGLLPPGMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQ
KSHVECSRFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFS
RDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFCKDISQLLSASFDQTIRI
HGLKSGKSLKEFRGHASFVNEATFTPDGHHIISASSDGTVKLWNVKTAECSSTFKPLGTS
AGTDITVNNVLLLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPR
GEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWRP
NT seq 1623 nt   +upstreamnt  +downstreamnt
atgtctattgaagtggaatctgcagacgtggtgcgtctgattatgcagtatttgaaggaa
aataatctgcaccgaaccctggccacgttgcaggaggagacaacagtgtctctaaacaca
gtggacagtatagaaagctttgtggcagagatcaacagtggtcactgggataccgtcctg
caagccatccagtccctcaagctaccagataaaaccttgatagatctttatgaacaggtt
gtcctggagcttattgagctgagagagctcggtgctgctcgttcactcctcagacagacc
gatcccatgatcatgctcaaacagacgcagccagagagatacatccacttggagaacctt
ttggctcgctcctacttcgatcccagagaggcttacccagatggcagcagtaaagagaag
cgccgcgccgccatcgctcaggccctggcaggagaggtcagcgtggtgccgccctcccgt
ctcatggctctgctgggacaggttagtaaccttgaaacctttaaacttgcattatataca
caagttgctgacatttcacaactcttaaatttccttcttcagtctctgaagtggcagcag
catcaaggtctcctgccgcctggtatgaccatcgacttgttcagaggcaaagcagctgtg
aaagacgtggaggaggagcgcttccccactcagttgagcaggcacataaagtttggacag
aaatctcatgtggagtgttctagattctcccctgatggtcagtacctggtcactgggtct
gtggatggattcattgaagtgtggaacttcaccactggtaaaatcaggaaggatctgaaa
tatcaggctcaagataacttcatgatgatggatgatgctgtgctgtgtatgtgcttcagt
cgagacactgagatgttagcaactggagcccaggatggaaagataaaggtgtggaagatt
cagagtggtcagtgtctgaggagattcgagcgtgcccacagcaaaggagtaacttgtctg
agtttctgtaaagacatcagccagctgctcagcgcctccttcgatcagaccatcagaatc
catggactgaaatccggtaaatcactgaaggagtttcgtggccacgcctcgtttgtcaac
gaagccacatttaccccagacggccatcacatcatcagtgcttcctcagatggaacagtc
aaactgtggaacgtgaaaactgcggagtgcagcagcacttttaagcctcttggtacgtca
gctggcacagacatcactgtcaacaatgtcctcctgctgcccaagaaccctgagcatttc
gtagtgtgtaaccgctccaatacagtggtcatcatgaacatgcagggacagattgtgagg
agtttcagctccggtaaaagggaaggcggtgactttgtgtgctgcactctgtcgccccgc
ggcgagtggatatactgcgtaggtgaagactttgtgctctactgcttcagcaccgtcaca
ggcaaactggagagaacactgacggttcacgagaaagatgtgattggcatcgcccatcat
ccccaccagaacttgatcgccacttacagcgaggatggcttgctgaaactctggagaccc
tga

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