Gambusia affinis (western mosquitofish): 122837484
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Entry
122837484 CDS
T07758
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03013
Nucleocytoplasmic transport
gaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122837484 (upf3b)
03015 mRNA surveillance pathway
122837484 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122837484 (upf3b)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122837484 (upf3b)
mRNA cycle factors
P-body specific factors
122837484 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
122837484
NCBI-ProteinID:
XP_043983780
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All DBs
Position
LG09:complement(21792099..21799828)
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AA seq
453 aa
AA seq
DB search
MKEDKENTRPKDRRVEIKCEDGEKTEKCKEKKEAMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYMEFFSNDTSLFPHLFARAYISFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRNKKKDSKCGTIAEDPDYKRFLEYYNGDGEKLTSTPETLLEEIEARSKELEAK
RTTPLLDFLKNKQRLREEKKEERRRRELERKRLRDEERRKWREEERKKRKEAEKMKRLEK
PLENKDKDQTKEEPKIKLLKKPDKSDDGDSEKPKEKFKKPEKPHREDRASGGADHRRRPN
FENKEERERKGNEDGRKEFRERDLDREKERERRLREKERIRRQDEERRRRREQQDGENTS
RKREEEIRKEKAMEKRRSENSADADKMEKPARENRKEESSKRERVRNKDRPAIQLYQPGA
RSRHRTTGGGADSGSADRKPDSDNKKAADRGED
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacactcgaccgaaagacaggagagtggaaataaaatgtgaa
gatggagagaagacggagaagtgtaaggagaagaaagaggccatgacaaagattgtgatc
agaagattacctccaagtctgactaaagaggagctggaggagcagctgcaacctcttcca
gaagtggactacatggagtttttctccaacgacaccagccttttcccacatctcttcgca
agggcttacatcagtttcaaaaatcaggaggacatcgttctcttcagggatcgatttgat
ggatatgtgttcatagataacagaggacaggagtatccagccattgtggagttcgcacct
ttccagaaaaccgccaagaaaagaaataagaagaaggactcaaaatgtggaacaattgct
gaagaccctgattataaaaggtttcttgaatattacaatggagatggagagaagctgaca
tccacaccagagactctgctagaggagatcgaggcaagatcgaaggaacttgaagccaaa
agaacaactcctcttctggacttcctgaagaataaacagagactgagggaggagaagaag
gaggagagaaggaggagagagcttgagcggaagcgtctgcgtgacgaagagcgccgcaaa
tggagggaggaagagcggaagaagagaaaagaggcggagaagatgaagagactggagaag
cctttggagaacaaagacaaggaccagactaaagaagaaccaaaaattaagctcctgaag
aagccagacaaaagcgatgacggcgattctgagaaacccaaagagaaattcaagaaacca
gagaagccgcacagagaggacagagcgtccggcggcgccgaccacaggaggaggccgaac
tttgaaaataaggaggagcgagaaagaaaagggaacgaagacgggcggaaggagttcagg
gagcgcgacctggaccgtgagaaggagagggaacgacggctgagggagaaggagcgcatc
cgacggcaggacgaggaacggcggagacggcgggagcagcaggacggagagaacacgtcc
agaaaacgagaggaggagatcagaaaggagaaggcgatggagaagaggaggagcgagaac
tctgcagacgccgataagatggagaaaccggccagagagaacaggaaggaggagagcagt
aaaagagagagagttcgtaataaggaccggcctgccattcagctgtaccaaccgggggcc
cggagccgccaccgcaccaccggaggcggcgccgactccggctccgccgacagaaaaccc
gactccgacaacaagaaggcggccgacagaggggaggactga
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