Gambusia affinis (western mosquitofish): 122838218
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Entry
122838218 CDS
T07758
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122838218 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gaf03310
]
122838218 (rorca)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122838218 (rorca)
Nuclear receptors [BR:
gaf03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122838218 (rorca)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122838218
NCBI-ProteinID:
XP_043984621
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Position
LG10:11756630..11795477
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AA seq
474 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQSQECSGVCSREENGDPAE
HGHTYRRGSSATLSDLDDITTLPEGLLFDLPLTPEDAGGDYCSLEMLGGSAGSSSSSQSS
PEQTSVDFVDGNHSIKHEYQLLHDSGLFSHAILNPLPEGCSLLEIEHIIQSVVKSHVETS
QYSTEELKRMAWNIYNPEETRSFQTKSAEVMWQQCTVHVTNAIQYVVEFAKRISGFMDLC
QNDQIILLKAGCMDVLLIRMCRAYNPINNTLLFDGKFASAQLFKALGCDDLVNAVFDLAK
TMSRIQMSEEEMALFSAAVLLSPDRPWLTDVQKIHKLQEKVYVGLQSCLQKEGASEEKLA
KMVSKLPMMRSICNLHIDKLEFFRLVHPETAYAFPPLYREVFGSEMTFPDSTEG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatagaagtcattccctgtaaaatctgtggggataaatcatcaggaatc
cactatggtgttatcacctgtgaaggctgcaagggtttctttcgacgcagccagcaaaac
aatgctatgtactcctgctcaagacaaaggaactgcttgattgaccggaccaaccgtaac
cgttgtcaacactgcaggctgcagaagtgtctcgctcttggcatgagccgtgacgcagtg
aagtttggtcgcatgtccaaaaagcagcgtgacagcctgtacgcagaggtccagaagcac
cagcagtcacaggagtgctctggagtctgttcccgggaggagaatggagacccagcagag
cacggccacacctacagaagaggctccagcgccacgctcagcgacctggatgacatcaca
accttgccggagggcctgctttttgacctgcccctcaccccagaggatgcaggtggagat
tactgcagcctggaaatgctgggaggaagcgcagggagcagctcgtcctctcagagctct
ccagagcagaccagcgtggactttgttgacggcaaccacagcatcaaacacgagtaccag
ctgttgcatgattctggactcttctctcatgccatcctcaaccctctgccagagggctgc
tccctgctggaaatagagcatataatccagagtgtagtgaagtcccatgttgagacaagc
cagtacagcacagaggagctgaagaggatggcatggaacatctataatccagaagagact
cgttcgttccagaccaaatcagctgaagtgatgtggcaacagtgcacggttcacgtcacc
aacgcaattcagtatgtggtggagtttgccaagcgcatctctggcttcatggacctctgt
cagaatgatcagattattctacttaaagcagggtgcatggatgtccttctgattcgtatg
tgccgagcctacaaccccatcaataatacactgctttttgatggaaagtttgcgagtgct
cagctttttaaagctcttggctgcgatgaccttgtgaatgctgtgtttgacttagcaaaa
actatgagtcgtatacagatgtcagaggaagagatggctctgttcagtgctgcggtcctt
ctgtctccagaccgaccttggctgacagatgttcagaagatccataaactgcaggagaaa
gtttatgtgggtctgcagagctgtctgcaaaaagagggggcatcagaggagaagctagca
aagatggtgtctaagcttcccatgatgaggtccatttgcaacctccacatagataagctg
gagtttttccgtctagttcaccctgagacggcatacgccttccctcctttgtacagggag
gtttttgggagcgaaatgaccttcccggactctaccgagggctag
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