KEGG   Gambusia affinis (western mosquitofish): 122839118
Entry
122839118         CDS       T07758                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
gaf  Gambusia affinis (western mosquitofish)
Pathway
gaf03018  RNA degradation
gaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122839118 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122839118 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gaf03019]
    122839118 (lsm4)
   03041 Spliceosome [BR:gaf03041]
    122839118 (lsm4)
Messenger RNA biogenesis [BR:gaf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     122839118 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     122839118 (lsm4)
Spliceosome [BR:gaf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    122839118 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 122839118
NCBI-ProteinID: XP_043986388
LinkDB
Position
LG10:22629609..22631963
AA seq 188 aa
MHVFSSRGQHYKRRSPTIRRQRRSVGGKSRVIYRRRQEIETNIIIMLPLSLLKTAQNHPM
LVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEI
IDMVKEEVLSKGRGRGGAQQNKQQGKGRGGPGRGVFGSRGRGMSGPGRGQQPPTDKKAGK
PQGMKNQH
NT seq 567 nt   +upstreamnt  +downstreamnt
atgcacgttttcagcagcagggggcagcactataagagacggtcccctaccattaggagg
caaagaagaagtgtaggtgggaaaagccgtgttatttatcgcaggagacaagaaatagaa
acaaatataatcataatgcttccattgtctctgttgaaaacggcccagaatcatcccatg
ctggttgagcttaaaaatggggaaacctacaacggccacctggtgagctgcgacaactgg
atgaacatcaacctaagagaagtcatctgcacatccagggatggagacaagttctggagg
atgcctgagtgctacatccgaggaagcacgatcaagtacctgcgaatccccgatgagatc
atcgacatggtgaaggaggaggttctgtcgaaggggcgcgggcgtggcggcgcccagcag
aacaagcagcagggcaaaggaagaggaggacccggccgaggtgtgtttggcagccgcggc
agagggatgtccggtcctgggcggggccagcagccgccgaccgataagaaagcaggcaaa
cctcagggaatgaagaaccagcactga

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