Gambusia affinis (western mosquitofish): 122839126
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Entry
122839126 CDS
T07758
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122839126 (col2a1a)
04518 Integrin signaling
122839126 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122839126 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gaf00536
]
122839126 (col2a1a)
Glycosaminoglycan binding proteins [BR:
gaf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122839126 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
122839126
NCBI-ProteinID:
XP_043986405
LinkDB
All DBs
Position
LG01:32609964..32634147
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDARLYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADAAAPIEAFGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGTRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLGG
NFAAQMSAGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGETGEPGSAG
PIGPRGPPGPSGKPGSDGDPGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGETGAAGAKGEAGAAGESGSNGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGAGGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAG
PQGAPGPAGEEGKRGARGEPGTAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPG
AAGPKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGRPGQRGLPGKDGETGPSGPSGPAGPVGERGEQG
QPGPPGFQGLPGPTGSPGEGGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGSDGPKGAIGPAGALGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEG
APGKDGGRGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGVRGAPGDRGEIGPPGPAGFAG
PPGADGQPGAKGELGEPGQKGEAGSSGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGPPGPNGNPGSAGPAGPAGKDGPKGVRGDAGPPGRPGDAGIRGPAGPPGEKG
EPGKDGDRGADGPSGPQGLAGGRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGAGDRG
PPGPVGPPGLTGPAGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGAQGPAGPPGLAGARGIAGPQGPRGDKGEAGESGERGQKGHRGFTG
LQGLPGPPGPAGDAGSAGPAGPSGAKGPPGPLGPAGKDGSNGQPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDIEVDS
TIKSLNTQIENLRSPDGTQKNPARSCSDLKLCHPEWKSGDYWVDPNLGSTADAIKVFCNM
ETGETCVYPSITKVPKKNWWTSKSKDRKHIWFGETMNGGFHFSYAQDGPAASAANVQLTF
LRLLSTEASQNFTYHCKNSIAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKRHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatctcaagttgtttta
ctatccgtggtcagatgtcaggaagaagatgaccaggaggcaggtggctgcatccaggac
gcccggctgtataatgataaggatgtgtggaagccagagccgtgccgcatctgtgtgtgt
gacagcggagcggttctgtgcgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccgctgcccccatt
gaggcgtttggtgctaagggccagaagggagaaccaggagagattgcagatgtcgtagga
cctagaggaccaccaggccccatgggccccccaggtgagcagggaacgcgtggagaagct
ggcgcaaagggcgacaagggaaatcctggaccaagaggacgagatggcgaacctggcaca
cctggaaaccctggacccgccggcccacctggaccacctggcccaccagggctgggaggg
aactttgctgctcagatgtctgcaggctttgatgaaaaggctggaggtgctcagatgggt
gtgatgcaaggaccaatgggtcccatgggtccccgtggcccccctggacctagcggagct
cctgggcctcagggtttccaaggagcacctggagagactggagagcccggttcagctgga
ccgattggacctcgtggaccacctgggccatctggaaaaccaggaagtgacggtgatcct
ggaaaacctgggaaacccggtgagcgcggacctgcagggcctcagggagctcgtggattc
cctgggacacctggacttcctggaatcaaaggacacagaggtcaccccggtctggatgga
gcaaagggagagactggtgctgctggagccaagggtgaggctggtgctgctggggaaagc
ggcagcaatggacctatgggccctcggggtctacctggtgagaggggacgtcctggtgct
tctggagctgcaggagcccgtggaaacgatggcttgcctggtccagctggtcccccgggc
ccagttggtcctgctggagctcccggtttcccgggatccccaggctccaagggtgaagcg
ggtcctactggcgctcgtggagctgaaggagcacaaggaccccgcggagaggccggcaca
ccaggatcacctggaccagctggggcggggggtaaccccggcactgatggtattcctggg
gctaaaggttctgctggggctcctggtattgctggcgcacctggcttccccggcccccga
ggtccacctggaccacagggagcaactggacctcttgggcccaaaggacaatctggagat
cctggtcttccaggactgaagggtgaatctggaccaaaaggagaactgggccctgctggg
cctcaaggggctcctggccctgctggagaagaagggaagcggggcgcgaggggagagccg
ggaactgctgggccaaacggacctccaggagaaagaggagctccgggtaaccgtggtttc
ccaggtcaggatggtcttgctggtgcaaagggagctcctggtgaccgtggcgtccctggt
gctgctgggccaaaaggtgccactggagaccccggacgtacaggcgaggccggcctccca
ggagccagaggtcttactggtcgtcctggagatgctgggccgcagggcaaagttggagct
tctggcgctccaggtgaggacgggcgacccggtccacctggtccccagggagcacgcgga
cagcccggagtcatgggattccctggaccaaaaggagcaaatggtgaacctggaaaacca
ggagagaagggactcgttggtcgacctggtcagagaggactacctggaaaagatggtgag
actggtccttctggaccttctggacctgctgggcctgttggagagagaggagagcaagga
cagcctggacctcctggcttccagggtctgcctggcccaactggttccccaggagaaggc
ggaaaacctggagatcagggtgttcctggagagggtggagctcctggtgcggttggaccc
agaggtgagcgtggtttccctggtgagcgcggtggcgccgggcctcagggtcttcaagga
ccgcgcggacttcctggaacaccaggaagtgacggacccaagggagcaattggaccagct
ggagctcttggagctcaaggacccccgggtctgcagggtatgcctggagagagaggagct
ggagggatcccaggagccaagggagacagaggtgataatggacagaaggggcctgaaggc
gctcctggaaaagacggtggtagaggtttgactggtcccattggtcctcctggcccatct
ggacccaacggtgccaagggtgagactggaccaactggtccttctggtgctcctggggtt
cgtggtgctcctggtgaccgcggtgagattggtcctcctgggcctgcgggcttcgctgga
cctcctggtgcagatggtcagccaggtgctaagggagaactcggtgagcccggacagaaa
ggagaggctggttcttctggaccacagggaccctccggagctcctggacctgtgggacct
actggcgtctctggacctaagggagcacgcggtgcccagggagctcctggagcgactggt
ttccctggtgctgctggcagagttggaccgcctggtcccaatggtaaccctggcagtgcc
ggtcctgctggtcccgctggtaaggacggtccgaaaggtgttcgcggtgacgccggtcct
ccaggacggccaggagacgctgggattcgtggaccagctggacctccaggagagaaagga
gagcctggaaaggatggagatcgtggagctgatggcccttcaggtccgcagggtttggct
ggaggtcgtggtattgttgggttgcctggtcagcgcggtgagagaggtttccctgggctc
cctggaccttctggagagcctggtaaacagggagcatctggtggtgctggtgaccgagga
ccgcctggacccgttgggcctcctggactcactggacctgctggagagccaggcagagag
ggtactcctggatcagatggacctcctggtagagacggagctgctggagtcaagggagag
cgaggtaacactggtcctgcaggcgctcctggagctccaggcgcccctggggctcccggg
ccagttggacccctcggcaaacagggagacagaggagaggctggcgctcaaggacctgca
ggacctccaggactggctggcgctagaggaattgctggaccccaaggaccacgtggagat
aagggggaggcgggtgagtctggagagagaggtcagaagggtcaccgtggcttcaccggt
ctgcagggtcttcctggacctccaggtcctgctggagatgccgggtctgctggacctgct
ggaccaagcggcgctaagggaccccctggtccgcttggacctgctggcaaagacggatct
aatggacagcctggtcccattggaccccccggacctcgaggacgctctggagaaactggt
cctgctggtcctcctgggaaccctgggccacctggtcctcctggcccaccaggtccaggc
attgacatctccgccttcgctggcctaggccagactgagaagtctcctgatcctctcagg
tacatgagggctgacgaggcctccagctccctcaggcagcatgacattgaggtcgattcc
acaatcaagtccctcaacacccagattgagaacttgcgcagccctgacggcacccagaag
aacccggctcgctcttgcagtgacctaaagctgtgccaccctgagtggaagagcggtgac
tattgggtggatcctaacctcggaagcacagccgacgcaatcaaggtcttctgtaacatg
gagacaggagagacctgcgtctacccaagcatcacaaaagtaccaaagaagaactggtgg
accagcaagagcaaggaccgcaaacacatctggttcggagagacgatgaatggcggcttc
cacttcagctatgctcaggacggtcctgctgccagcgctgccaacgtccagctgaccttc
ttgaggcttctgtccactgaagcgtcccagaactttacttatcactgcaagaacagcatt
gcctacatggatcaggcctcaggaaacctgaagaaggcgttgctactgcagggctccaac
gacgtggagatccgcgccgagggcaacagtcgcttcacgtacagcgtgttggaagatggc
tgcaagagacacacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacc
tcccgtctgccaatcgtagacattgctccaatggacattggaggagcagatcaagaattc
ggagtggatataggcgccgtctgcttcttgtaa
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integrated database retrieval system
