Gambusia affinis (western mosquitofish): 122839258
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Entry
122839258 CDS
T07758
Symbol
bcor
Name
(RefSeq) BCL-6 corepressor isoform X1
KO
K23215
bcl-6 corepressor
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122839258 (bcor)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gaf03036
]
122839258 (bcor)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122839258 (bcor)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PUFD
BCOR
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Motif
Other DBs
NCBI-GeneID:
122839258
NCBI-ProteinID:
XP_043986584
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Position
LG11:10259213..10302239
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AA seq
1807 aa
AA seq
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MVDARLTPLAAMGLDRSTLIHDSLRLHGGVVYPGIRTLPAEKSRETPTLPLAYSRDGLPE
LIYKPDSPLDSRKPANGYQSLYKGSHPSLHKPVLVTGAEGLGLERRIGPGEKVSELGLAG
AGGSYLRMPLLSPYPEAGMYSFMDTSKYAALNIYKASLLTQPSPYLPQHLPYPPLCAAQG
VNVTSAAAVSVAERLYYMPPYPPSPISSPLVAPPMRIPAVTVTPTSLVHCQDKGLGVTSP
FSQQLHQPSPHPQHHQAAMERERSPSRSSRPSRPPSRKGTTNNSTSSTSTSGTTVGNNSL
PADSSHMSSRLPQPPPLPALLDKALDLQRPVARIGQPSVSSAASISASSASTQSIAHPFS
ISSMASEQASSARPSPHKPRSRDGTSENRGAGVEKVRSRSPSLVSFERPGNQSQPTKDSA
EKPLDLSGRIIEYGLPANGFSVKMDSVSSGTRYGLPSGRELLNENVSLSPSSHPHSVVCS
TSSKVSERPEMISTLHSSWVVPSPSPSHAQHASGLPPSPRSNADLGLSQAKGASPSVIKN
KGLERVLPQQRSSSCPRIGEPNLSVPSSQHSGCSLISSRALSPKPNGEWVKHSPSQSAHH
REGTEKSAQTNKRSEPTPDLSSYKRPCMENGHPPPHLFLPQSEAYLNHSLAYANRYLQYP
IPDGLALHSVPISGKGPVYPNPVLLGNNGLYPTHLAGKHPLTYPNLPAGPGTEYLTYNSQ
EMAHPLMQTLSDSKLTDRADATLKPRGQDRPRGAVEEGGSHRDHSAGKETGEGNQMKHDR
EVGVQGQGGSQSKNLPSSAASREKIVCIDLVHSDTDIESTPTVYKHPSAETSNKGNQNEC
HSSQNLTNTDSETKLQAHLSHSGQTPNLKVNNTDGQQEALFGKGKIPQETPCLVEVSRTS
QTRPELSDAEESTEESSPSPDPGDQDQSTLRCARTSGERSSGKDKRDGGSCAPLAQHNTN
AVKECEREAEKEDNIVDLGESQAEGDDEEEEDEGTQASSKNSRRSSLAKRIANSSGYVGD
RFKCVTTELYADSSKLSREQRALQMEVLSREESNISQPAANWERAMMRFSELELKEKEGG
GGGGGLCVSASVAAAGRELADGQRRERVLEHCQHTTRQAEREGVRPLYANNRVPVLQRCV
APRDLVSPGHLAQDGARKAATRESEEGLCMPPTLTPSKEFLEEKVGLGFGAARKRPLIKE
EQDDSEEGEREKRAKLSTDECEQASPDEDDDDDEVRKLKVRIELKGLRLSKPTAGAASPD
GSQFKQERPWPLPRTENPAQTQRERKIRAAEPEDRAAAQRNDINRKWGCEKLPNGVAAPV
LPPSQPKDRPHQPSLFSGDRGLKEPKRGPPSPAPELCVGGVPPLKPRRHSDTDKPKGKRP
CKTKHTGQRDRDREREREKRKEAAPTSPGQRLAPDLGSAEDDKPAEQRSAPRKRAASPNH
YPCSPLKPCSPAALCPPALLPQANVRPPPEVPPGLHRTPPLEASAVRPIPPEARRLIVNK
NAGETLLQRAARLGYEEVVLYCLENRVCEVNHRDYAGYCALHEACARGWLSIVQHLLDYG
ADINCSAQDGTRPIHDAVENDHLDVVRVLLSYGADPTLATYSGRSLLKMTRSDSMERFLT
DYFADLQGRSDDDPGLYWEFYGSAVCESGEEGGVYNILADAPGPDNEDEDEKREVFEFEF
SDRPLLPCYNIQVSLSQGPRNWLLLSDVLRRLRLSARAFRQAFPHMEVVTVAEAEFYRQA
SLSQLFSCPEELEGFHPDSKDLLDLVEDSAELAALLGSSLECLDDRWDHPADKLKDRMKA
AGRLASS
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggtggatgcaaggttgacgcccctggctgcgatggggcttgaccgaagcactctgata
cacgacagcctccgtctccatggtggggtcgtatacccagggatcaggaccctcccagcg
gagaagagcagagagacacccaccctcccactcgcctacagtagggatggtctcccagag
ctaatttacaaacccgacagccctctggacagtcgtaagcccgcaaatggttaccagagt
ctctacaagggcagccatccaagccttcacaagcctgtgctggttactggtgctgagggc
cttggcttggaacggcgaatagggcccggagaaaaagtgtcagagctggggctggctggg
gcgggtggcagctacctccgcatgcctttgctgagcccatacccggaagcaggcatgtat
tcctttatggacacatccaagtatgctgctttgaacatatacaaagcctccctgctcacc
caacccagcccttaccttccccagcatctgccctacccgcccctgtgtgcagcccagggg
gtcaatgttacatctgctgcagctgtttctgttgctgagaggctctactatatgcctccc
taccctccgtctcccatttcttctcctctggtggcccctcccatgaggattcctgcggtc
acagtgacccccacttcgctggtacactgccaagacaaagggctcggtgttacatctccg
ttttcacagcagcttcatcaaccctctcctcatcctcagcaccatcaggcagccatggaa
agagagcgttctccgagcaggagcagcagaccaagcagacctccgtccaggaagggcaca
accaacaatagcaccagtagtaccagcaccagtggcaccactgtcgggaataatagtctg
cctgctgattcttcacacatgtcctcccgcctcccccagcctccccctctgcctgctctc
cttgacaaagcactggatttgcaaaggccagttgccagaataggacaaccatccgtctct
tctgcagcttcaatatctgcatcctctgcctctacgcagtccattgctcaccctttttct
attagcagcatggcatcagagcaggcctcctctgccagacccagcccccacaaacccagg
tcacgagatgggacctctgagaacagaggtgcaggagtggaaaaagtacgcagcaggtct
ccttcattagtcagttttgagaggccaggtaaccaatctcaaccaaccaaagactctgca
gagaagcctctggatttgtcaggaagaataattgagtatgggctccctgccaatggtttc
tcagttaagatggactctgtgtcatctggcacccgttatggacttccctccggtcgagag
cttctaaatgaaaatgtatccctctccccttcctcccatcctcattctgtggtgtgcagc
acttcttcaaaggtctcagagagaccagaaatgatcagcactttacactcatcatgggtt
gtaccaagcccatctccctcacatgcacagcacgcgtcgggtttgccaccctctccgagg
tcaaatgcagacctgggcctttcacaagccaaaggcgcctcaccctctgtcatcaagaat
aagggcctagagagggttctccctcagcagcgaagctcgtcctgtccaaggattggagag
cccaacctcagtgttccctcctctcaacactctggctgctctttgatcagctccagggct
ctttccccgaaacctaatggtgaatgggtaaaacacagccccagccagtcagcgcatcac
agagagggaacagagaagtctgcccagacgaataagagaagtgaaccaactccagacctg
tcatcatacaagaggccatgtatggaaaatggtcaccctcctccccacctttttcttcct
caaagtgaagcttatttgaaccacagcttggcttatgctaacagatatctgcagtacccc
atccctgatggcttggcgctacactccgtcccaatttcagggaaaggcccagtgtaccct
aaccccgttctgcttggcaacaacggtctttacccaacccacttagctggaaaacaccct
ttaacctacccaaatctcccagctggtccgggcacagaatacctcacttataactcacag
gagatggcccatccgctgatgcagacactctctgacagcaaactgacagacagggcagat
gcaacactaaaaccccggggacaggacagaccacggggagctgtcgaagaaggcgggagc
cacagagatcacagtgctgggaaagagacaggagaaggcaaccaaatgaagcatgatagg
gaggtaggcgtgcaaggacagggtggcagtcaaagcaaaaacctcccctcatctgcggcg
tccagagaaaagattgtctgcattgaccttgtacactcagacacagatatcgagtctacc
ccaacagtctacaaacatccttctgctgagactagcaacaaggggaaccaaaatgaatgt
catagcagtcaaaacctgacaaacactgacagtgagactaaactccaagcacatctaagc
cactctggacagacccccaacctgaaggtgaacaacactgatgggcaacaagaagcttta
tttgggaaaggaaagattccccaggaaacaccctgtcttgttgaggtatcaaggacatcc
cagaccagaccagagctctctgatgcagaagagagcacagaggaaagtagccccagccca
gaccctggggatcaagatcagagcactttacgctgtgcccgcacctcaggggagcgtagc
tctggtaaggacaaaagagatgggggcagctgcgctcctcttgcacagcacaatacaaat
gcagtaaaggagtgtgagagagaggctgaaaaagaggacaatattgttgatcttggggag
tcccaagcagagggagatgatgaagaggaggaggacgaaggtacccaggcttcatctaaa
aactctcgtaggtccagcttggccaaacggatcgcaaactcctctggctacgttggcgac
cgctttaaatgtgtcaccacagagctgtatgctgactctagcaaactgagccgcgagcag
agagcactgcagatggaagtcttatcacgagaggagagtaatataagccaacctgcagct
aactgggagcgggcaatgatgcggttctctgagctggagctgaaggagaaggagggcggc
ggcggtggcggcggtttgtgcgtttctgcctcggtagcggcagcaggacgggagctggca
gatggccagcgcagagagagagtgctggagcactgccagcacaccaccaggcaggcggag
agggagggtgtccgtccgctgtacgccaacaacagagttccggttctccagaggtgcgtg
gcgccgagggacctcgtgtccccgggtcacctggctcaagatggagccaggaaagcggcg
acgagagagtctgaggagggactgtgcatgcctcccactctgacgccatcaaaggagttc
ctggaggaaaaggtcggcctgggctttggagctgccagaaaacgcccgctcatcaaggaa
gagcaggacgactcggaggaaggggagcgggagaagagagccaagctttccacggatgag
tgcgagcaggccagtcccgatgaagatgacgacgatgacgaggtgcgaaagctcaaagtc
cgcattgagctcaagggactgcgactcagcaagcccacggcgggcgcagcgtcacccgac
ggctcccagttcaagcaggagaggccctggcccctgcctcgcacagaaaacccagcacag
actcagcgggagcgcaagatccgggcggcagagcccgaggaccgggccgcggcgcagagg
aacgacatcaacaggaagtggggctgcgagaagctacctaatggagtagctgctcccgtc
cttccccccagccagccgaaagacaggcctcaccagccgagcctcttctcaggtgaccgc
ggccttaaggagccgaagagggggcccccgtcgccggccccggagctctgcgtgggaggc
gtccctcccctcaaaccccgtcgccatagtgacacggacaaacccaagggcaagcggccg
tgcaagaccaagcacacgggccagcgagacagagacagagagagggagagggagaagagg
aaagaggccgcgcccaccagccccggccagcgcttggcgcctgatctgggatcagccgag
gacgacaagccggccgagcagcgcagtgctccgaggaagagagccgcctctcctaatcac
tatccctgctctccgctgaagccctgctcccccgccgcactctgcccgcccgccctgctg
ccccaggcgaacgtcaggcctccgccggaggtgccgccggggctgcacaggaccccccct
ctggaggcctccgccgtgcgccccatcccgccggaagctcggcggctgatcgtgaacaag
aacgccggcgagactctgcttcagagagcggcgcggctcggatacgaggaggtggtgctg
tactgcctggagaacagagtctgcgaggtcaaccacagagactacgcgggctactgcgca
ctccacgaggcgtgcgcccggggctggctcagcatcgttcaacatctgctggattatggc
gccgacatcaactgcagcgcacaggacgggaccagacccatccacgacgctgtggagaac
gaccacctggacgtggtgcgggtcctgctgtcgtacggagccgaccccactctggccacg
tattctggccgcagcctgctgaaaatgacccgcagcgacagcatggagcgtttcctcacc
gattattttgctgaccttcagggccgctcagatgacgacccagggctttattgggagttc
tatggcagtgctgtgtgtgaatctggcgaagaaggcggtgtctacaacatcctggcagac
gcccccggcccagacaatgaggacgaggacgagaaaagggaggtgtttgaatttgagttc
tctgaccgacctctgttgccgtgctacaacatccaggtgtccctctcccagggaccaagg
aactggctgctgctgtccgacgtgctccggcgcttgcgcttgtccgcccgcgccttccga
caagccttcccccacatggaggtggtgacggtggccgaggccgagttctaccggcaggcg
tccctgtcgcagctcttctcctgcccggaggagctggagggcttccacccggacagcaag
gacctgctggacctggtggaagacagcgcggagctggccgctctgctgggctcatcactg
gagtgtctggacgaccgctgggaccacccggcggacaaactcaaggacagaatgaaggcg
gcgggcaggctggcctcatcctga
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integrated database retrieval system