Gambusia affinis (western mosquitofish): 122839289
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Entry
122839289 CDS
T07758
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gaf03000
]
122839289 (sox1a)
Transcription factors [BR:
gaf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
122839289 (sox1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
KOKOPELLI
ZrgA
Motif
Other DBs
NCBI-GeneID:
122839289
NCBI-ProteinID:
XP_043986659
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All DBs
Position
LG11:complement(11114486..11162993)
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AA seq
345 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTSTGPTGPNGGSKASQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPSGGGGVGLSVGMSSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNS
QSYMNASPSSYGGITYTQHQGSGVSSSAAMGTLGSLVKSEPSVSPPVSGTHTRGPCPGDL
REMISMYLPTGEPGDPSMQSRLHALPQHYQSAAAGVNGTVPLTHI
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagactgaccttcattcccccggcccccaaacgaacacgagc
acggggccaacggggccgaacggcggctccaaagcgagccaggagcgcgtgaagagaccc
atgaacgcgttcatggtgtggtcccggggccagcggaggaagatggcgcaggagaacccc
aagatgcacaattcggagatcagcaagcgcttgggtgccgagtggaaggtgatgtccgag
gcggagaagcgtcccttcatcgacgaggcgaagcggctgcgagccatgcacatgaaggag
catccggattacaagtaccggccgcggcgaaagacgaagacgctgctgaagaaggacaaa
tactcgctggccggcgggctgctttccgggcccagcggcggcggtggtgtcggtttaagc
gtcggcatgagctcatccggggtcggacagaggttagagagccccgggggtcacggagga
tccgccggctccggctatgcgcacatgaacggctgggcaaacggcgcgtactcgggccag
gtggccgcagccgccgcggccgctgcgatgatgcaggaggcgcagctcgcctacagccag
caccccggcagcggggcacaccaccaccaccaccactcgcaccaccaccactcccacaac
ccgcagcccatgcaccgctacgacatgacggccctgcagtacagccccatctcgaactct
cagagctacatgaacgcctcgccgtccagctacggcgggatcacctatacgcagcaccag
ggctccggcgtctcctcctcggctgccatgggaacgctggggtcgctggtgaagtcggaa
ccgagcgtgagtccacccgtcagcggcacgcacactcggggtccctgccctggagacttg
agggagatgataagcatgtatttaccgaccggggagccgggggacccgtccatgcagagc
agactgcacgccttgccgcagcattaccagagcgccgcggctggagtgaacgggacggtc
cctctgacgcacatttag
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