Gambusia affinis (western mosquitofish): 122839364
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Entry
122839364 CDS
T07758
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122839364 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122839364 (bard1)
04121 Ubiquitin system [BR:
gaf04121
]
122839364 (bard1)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122839364 (bard1)
03400 DNA repair and recombination proteins [BR:
gaf03400
]
122839364 (bard1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122839364 (bard1)
Ubiquitin system [BR:
gaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122839364 (bard1)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122839364 (bard1)
DNA repair and recombination proteins [BR:
gaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122839364 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_5
Ank_3
Ank_4
BRCT_2
BRCT
zf-RING_5
zf-RING_10
PTCB-BRCT
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
122839364
NCBI-ProteinID:
XP_043986803
LinkDB
All DBs
Position
LG11:complement(20660308..20685174)
Genome browser
AA seq
800 aa
AA seq
DB search
MDNITTLQTDDWKNTKEAVANFRRLLLCSKCSNLMEEPVCLGICEHMLCRSCAGPRAGVG
CAVCLSPAWVKDIQINRQLSSIIQLFSDLESLLNPTEQPDSSVAEVSLQREAAVLKHKKN
FKIWFSPRSRKVRCKVEKPLEVTVPDRKSSEEQPAARSKVPTAQGQDLSVFNFTSSSQDS
SSSQNESNVNSKGKKRSKKTATTRQVQGCTSSTRRQTKDNLKKKKLEAINQQWGITDDQN
PSSGPEPSCAVGVRGSRKRVSFLSPSVSTDEAQTEASQVCELGLTNRTINESLLGEEINV
LSHESQHGQSTSCQMSSTNNPNLDDSSKKDTNISSQESLSKRSKTVERNCSLETMPKRQR
ASSGQRRKLPGGKASPFTERLTLASPTSEKKKKHPREGKQHSPSVVALMSSDIHNKSVCS
PRSSFGHSSPGSPAVRKRNLRGETPLHLAAIKGDVDSVKELLDQGADPNLKDNAGWTPLH
EACNLGHLAAVKVLVARGALLNTPGYENDSPLHDAVRNGHAAIVKLLLQLGASQNVLNLH
GKRPADYAVSQEMLAIFQEAAEGIQYANSHTSHSPSATISASSESARRDQTLMLLASKLS
SPEQRQLVKLGVLLGGRIVDTFSGSVSHVVVPEGQMPTTYSTLLGLLAGCWVVKYSWVKA
CLQAGKWLPEAEHEAGEGPQRSRMNRCSLLPPLFDGCFFFLLGSFKGTTKNELAKLLREG
GGQLLSRQPKPDSDVTQTLNAAAYHAEPGSDQALCTQYIIYDPQGTYKPAVVRRGKVWSA
PSTWIIDCIAAFSLLPVPQN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggataatatcacaacgctacaaacagatgactggaagaacactaaagaggcggttgca
aactttcgtcgactgttgctttgctccaaatgctcaaatttgatggaggagccagtgtgt
ctggggatatgcgagcatatgctgtgcaggtcttgtgctggcccccgggcaggagtcggc
tgcgcagtgtgtctcagccctgcgtgggtgaaggacattcaaatcaacaggcagcttagc
agcatcatacagctcttcagtgacttggagtccctgcttaatcccacagaacaaccagac
tcctctgttgctgaggtcagtttgcaaagggaagctgcagtcctaaaacacaagaagaac
tttaagatctggttcagtcctcgcagtcggaaggtgcgctgcaaggtggagaagccttta
gaagtcactgttccagacaggaagtcatctgaagaacagcctgctgctcgatccaaagtc
cccacagctcagggccaggacctttcagtgtttaatttcacttcgtcctcccaagactct
tcatcttcacaaaatgaaagtaatgtaaacagtaaaggaaagaaaagatctaagaaaact
gctactacaaggcaggttcaggggtgcaccagtagcacacgtagacagactaaagataat
ttgaaaaagaagaagctggaggccataaaccagcagtggggaattacagacgaccaaaat
ccctcatctggaccagagccatcctgtgctgtcggagtaagagggtcccgcaaaagggtt
tctttcttaagcccttctgtctcgactgatgaggcccagactgaagcctcacaggtctgt
gaactcggtttgacaaaccgcacaataaacgaaagtctcttgggagaggagatcaatgtg
ctgagtcacgaaagccagcatggtcagagcacgtcctgtcagatgtcgtcaacaaataac
ccaaatctggatgacagttccaaaaaggacacaaacatctcttcccaggagagtctctcc
aaaagaagcaaaacagtggagagaaactgctccttggaaaccatgccaaaaagacagagg
gcttcttcaggccaaaggagaaaattacctggtggaaaagcttcccctttcactgagcgt
ttaactttagcaagccccacaagtgaaaagaaaaagaaacacccaagagaaggtaaacag
catagtccgtctgttgtagctctcatgtcttcagacatccacaataaatccgtgtgcagt
cctcggtcatctttcggccattcaagccctggaagccctgcagtaaggaagaggaacctc
agaggagagacccctctacatcttgctgcaataaagggagatgtagattctgtcaaggaa
cttctggatcagggagccgaccccaacctgaaagataacgccggctggacaccactgcat
gaggcttgtaatctgggtcacctggctgctgtgaaggttttggtcgcaaggggagccctg
ttgaacacacctggctatgaaaatgattctccactccatgatgctgtgaggaatggacat
gcagccattgttaagctgctgctgcagcttggtgcctcacagaacgttcttaatctacat
ggaaagcgtcctgcagattatgcagtgagccaggagatgctggcgattttccaggaagct
gcagaaggaatccaatatgctaattctcatacatctcatagcccctcagccactatctct
gcgtcgagtgagagtgcgagaagggatcagactttaatgttattggccagcaagctatca
tcaccagagcagcgtcagctagtcaaactgggagtgctactgggaggaaggatcgttgat
accttttctggctcagtgagccatgtcgtcgtgccagaaggacaaatgcccaccacctac
tccaccctcctgggtcttcttgctggctgctgggttgtcaaatacagctgggtgaaagca
tgtctgcaggcgggaaagtggctgcctgaagctgagcatgaagcaggagaaggccctcag
cgcagtcgcatgaacagatgtagtttgcttccaccgcttttcgatggttgtttcttcttc
ctcctcggctcctttaaggggacaaccaaaaacgagcttgccaagctgttgcgagaagga
ggaggccaactcctgagccggcagccaaagccggacagcgacgttacacagactctgaat
gcagcagcctaccatgcagagccaggctctgaccaggccctctgcacccagtacatcatc
tacgacccacagggaacctacaagccggcggttgtcagacgagggaaagtgtggtccgct
ccctcaacctggatcatcgactgcattgcagccttcagcctcctccctgtacctcagaat
taa
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integrated database retrieval system
